Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10270

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS10265 and RR42_RS10270 are separated by 52 nucleotidesRR42_RS10270 and RR42_RS10275 are separated by 138 nucleotidesRR42_RS10275 and RR42_RS10280 are separated by 3 nucleotides RR42_RS10265: RR42_RS10265 - 3-hydroxyacyl-CoA dehydrogenase, at 2,197,332 to 2,199,410 _RS10265 RR42_RS10270: RR42_RS10270 - hypothetical protein, at 2,199,463 to 2,200,236 _RS10270 RR42_RS10275: RR42_RS10275 - LuxR family transcriptional regulator, at 2,200,375 to 2,201,007 _RS10275 RR42_RS10280: RR42_RS10280 - hypothetical protein, at 2,201,011 to 2,202,153 _RS10280 Position (kb) 2199 2200 2201Strain fitness (log2 ratio) -1 0 1at 2198.523 kb on + strand, within RR42_RS10265at 2198.802 kb on - strand, within RR42_RS10265at 2198.815 kb on - strand, within RR42_RS10265at 2198.815 kb on - strand, within RR42_RS10265at 2199.077 kb on - strand, within RR42_RS10265at 2199.138 kb on + strand, within RR42_RS10265at 2199.138 kb on + strand, within RR42_RS10265at 2199.149 kb on + strand, within RR42_RS10265at 2199.150 kb on - strand, within RR42_RS10265at 2199.150 kb on - strand, within RR42_RS10265at 2199.168 kb on + strand, within RR42_RS10265at 2199.554 kb on - strand, within RR42_RS10270at 2199.554 kb on - strand, within RR42_RS10270at 2199.627 kb on + strand, within RR42_RS10270at 2199.627 kb on + strand, within RR42_RS10270at 2199.627 kb on + strand, within RR42_RS10270at 2199.627 kb on + strand, within RR42_RS10270at 2199.627 kb on + strand, within RR42_RS10270at 2199.794 kb on - strand, within RR42_RS10270at 2200.142 kb on + strand, within RR42_RS10270at 2200.353 kb on - strandat 2200.461 kb on - strand, within RR42_RS10275at 2200.461 kb on - strand, within RR42_RS10275at 2200.525 kb on + strand, within RR42_RS10275at 2200.548 kb on - strand, within RR42_RS10275at 2200.548 kb on - strand, within RR42_RS10275at 2200.634 kb on - strand, within RR42_RS10275at 2200.707 kb on - strand, within RR42_RS10275at 2200.707 kb on - strand, within RR42_RS10275at 2200.707 kb on - strand, within RR42_RS10275at 2200.742 kb on + strand, within RR42_RS10275at 2201.012 kb on + strandat 2201.231 kb on - strand, within RR42_RS10280

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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2,198,523 + RR42_RS10265 0.57 +1.2
2,198,802 - RR42_RS10265 0.71 +0.8
2,198,815 - RR42_RS10265 0.71 -0.4
2,198,815 - RR42_RS10265 0.71 -0.3
2,199,077 - RR42_RS10265 0.84 -0.1
2,199,138 + RR42_RS10265 0.87 +1.2
2,199,138 + RR42_RS10265 0.87 -0.2
2,199,149 + RR42_RS10265 0.87 +1.4
2,199,150 - RR42_RS10265 0.87 +0.5
2,199,150 - RR42_RS10265 0.87 +0.0
2,199,168 + RR42_RS10265 0.88 -0.7
2,199,554 - RR42_RS10270 0.12 +0.2
2,199,554 - RR42_RS10270 0.12 -1.2
2,199,627 + RR42_RS10270 0.21 +0.2
2,199,627 + RR42_RS10270 0.21 -1.4
2,199,627 + RR42_RS10270 0.21 -0.5
2,199,627 + RR42_RS10270 0.21 -0.3
2,199,627 + RR42_RS10270 0.21 -0.7
2,199,794 - RR42_RS10270 0.43 -1.6
2,200,142 + RR42_RS10270 0.88 -0.6
2,200,353 - +0.5
2,200,461 - RR42_RS10275 0.14 -0.3
2,200,461 - RR42_RS10275 0.14 +0.5
2,200,525 + RR42_RS10275 0.24 +0.3
2,200,548 - RR42_RS10275 0.27 -0.1
2,200,548 - RR42_RS10275 0.27 -0.1
2,200,634 - RR42_RS10275 0.41 +0.2
2,200,707 - RR42_RS10275 0.52 -0.5
2,200,707 - RR42_RS10275 0.52 +0.5
2,200,707 - RR42_RS10275 0.52 -0.0
2,200,742 + RR42_RS10275 0.58 +1.6
2,201,012 + +0.2
2,201,231 - RR42_RS10280 0.19 -0.2

Or see this region's nucleotide sequence