Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS10265 and RR42_RS10270 are separated by 52 nucleotides RR42_RS10270 and RR42_RS10275 are separated by 138 nucleotides RR42_RS10275 and RR42_RS10280 are separated by 3 nucleotides
RR42_RS10265: RR42_RS10265 - 3-hydroxyacyl-CoA dehydrogenase, at 2,197,332 to 2,199,410
_RS10265
RR42_RS10270: RR42_RS10270 - hypothetical protein, at 2,199,463 to 2,200,236
_RS10270
RR42_RS10275: RR42_RS10275 - LuxR family transcriptional regulator, at 2,200,375 to 2,201,007
_RS10275
RR42_RS10280: RR42_RS10280 - hypothetical protein, at 2,201,011 to 2,202,153
_RS10280
Position (kb)
2199
2200
2201 Strain fitness (log2 ratio)
-1
0
1 at 2198.523 kb on + strand, within RR42_RS10265 at 2198.802 kb on - strand, within RR42_RS10265 at 2198.815 kb on - strand, within RR42_RS10265 at 2198.815 kb on - strand, within RR42_RS10265 at 2199.077 kb on - strand, within RR42_RS10265 at 2199.138 kb on + strand, within RR42_RS10265 at 2199.138 kb on + strand, within RR42_RS10265 at 2199.149 kb on + strand, within RR42_RS10265 at 2199.150 kb on - strand, within RR42_RS10265 at 2199.150 kb on - strand, within RR42_RS10265 at 2199.168 kb on + strand, within RR42_RS10265 at 2199.554 kb on - strand, within RR42_RS10270 at 2199.554 kb on - strand, within RR42_RS10270 at 2199.627 kb on + strand, within RR42_RS10270 at 2199.627 kb on + strand, within RR42_RS10270 at 2199.627 kb on + strand, within RR42_RS10270 at 2199.627 kb on + strand, within RR42_RS10270 at 2199.627 kb on + strand, within RR42_RS10270 at 2199.794 kb on - strand, within RR42_RS10270 at 2200.142 kb on + strand, within RR42_RS10270 at 2200.353 kb on - strand at 2200.461 kb on - strand, within RR42_RS10275 at 2200.461 kb on - strand, within RR42_RS10275 at 2200.525 kb on + strand, within RR42_RS10275 at 2200.548 kb on - strand, within RR42_RS10275 at 2200.548 kb on - strand, within RR42_RS10275 at 2200.634 kb on - strand, within RR42_RS10275 at 2200.707 kb on - strand, within RR42_RS10275 at 2200.707 kb on - strand, within RR42_RS10275 at 2200.707 kb on - strand, within RR42_RS10275 at 2200.742 kb on + strand, within RR42_RS10275 at 2201.012 kb on + strand at 2201.231 kb on - strand, within RR42_RS10280
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 2,198,523 + RR42_RS10265 0.57 +1.2 2,198,802 - RR42_RS10265 0.71 +0.8 2,198,815 - RR42_RS10265 0.71 -0.4 2,198,815 - RR42_RS10265 0.71 -0.3 2,199,077 - RR42_RS10265 0.84 -0.1 2,199,138 + RR42_RS10265 0.87 +1.2 2,199,138 + RR42_RS10265 0.87 -0.2 2,199,149 + RR42_RS10265 0.87 +1.4 2,199,150 - RR42_RS10265 0.87 +0.5 2,199,150 - RR42_RS10265 0.87 +0.0 2,199,168 + RR42_RS10265 0.88 -0.7 2,199,554 - RR42_RS10270 0.12 +0.2 2,199,554 - RR42_RS10270 0.12 -1.2 2,199,627 + RR42_RS10270 0.21 +0.2 2,199,627 + RR42_RS10270 0.21 -1.4 2,199,627 + RR42_RS10270 0.21 -0.5 2,199,627 + RR42_RS10270 0.21 -0.3 2,199,627 + RR42_RS10270 0.21 -0.7 2,199,794 - RR42_RS10270 0.43 -1.6 2,200,142 + RR42_RS10270 0.88 -0.6 2,200,353 - +0.5 2,200,461 - RR42_RS10275 0.14 -0.3 2,200,461 - RR42_RS10275 0.14 +0.5 2,200,525 + RR42_RS10275 0.24 +0.3 2,200,548 - RR42_RS10275 0.27 -0.1 2,200,548 - RR42_RS10275 0.27 -0.1 2,200,634 - RR42_RS10275 0.41 +0.2 2,200,707 - RR42_RS10275 0.52 -0.5 2,200,707 - RR42_RS10275 0.52 +0.5 2,200,707 - RR42_RS10275 0.52 -0.0 2,200,742 + RR42_RS10275 0.58 +1.6 2,201,012 + +0.2 2,201,231 - RR42_RS10280 0.19 -0.2
Or see this region's nucleotide sequence