Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07505 and RR42_RS07510 are separated by 62 nucleotides RR42_RS07510 and RR42_RS07515 are separated by 100 nucleotides
RR42_RS07505: RR42_RS07505 - benzoyl-CoA oxygenase, at 1,602,395 to 1,603,819
_RS07505
RR42_RS07510: RR42_RS07510 - benzoyl-CoA-dihydrodiol lyase, at 1,603,882 to 1,605,582
_RS07510
RR42_RS07515: RR42_RS07515 - transcriptional regulator, at 1,605,683 to 1,606,621
_RS07515
Position (kb)
1603
1604
1605
1606 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1602.885 kb on + strand, within RR42_RS07505 at 1602.886 kb on - strand, within RR42_RS07505 at 1602.957 kb on + strand, within RR42_RS07505 at 1602.957 kb on + strand, within RR42_RS07505 at 1602.958 kb on - strand, within RR42_RS07505 at 1602.971 kb on - strand, within RR42_RS07505 at 1603.046 kb on - strand, within RR42_RS07505 at 1603.341 kb on + strand, within RR42_RS07505 at 1603.342 kb on - strand, within RR42_RS07505 at 1603.342 kb on - strand, within RR42_RS07505 at 1603.404 kb on + strand, within RR42_RS07505 at 1603.404 kb on + strand, within RR42_RS07505 at 1603.404 kb on + strand, within RR42_RS07505 at 1604.005 kb on + strand at 1604.006 kb on - strand at 1604.345 kb on + strand, within RR42_RS07510 at 1604.346 kb on - strand, within RR42_RS07510 at 1604.566 kb on + strand, within RR42_RS07510 at 1604.566 kb on + strand, within RR42_RS07510 at 1604.566 kb on + strand, within RR42_RS07510 at 1604.567 kb on - strand, within RR42_RS07510 at 1604.567 kb on - strand, within RR42_RS07510 at 1604.567 kb on - strand, within RR42_RS07510 at 1604.740 kb on - strand, within RR42_RS07510 at 1605.389 kb on + strand, within RR42_RS07510 at 1605.410 kb on + strand, within RR42_RS07510 at 1605.410 kb on + strand, within RR42_RS07510 at 1605.411 kb on - strand, within RR42_RS07510 at 1605.595 kb on + strand at 1605.778 kb on - strand, within RR42_RS07515 at 1605.912 kb on + strand, within RR42_RS07515 at 1605.912 kb on + strand, within RR42_RS07515 at 1605.912 kb on + strand, within RR42_RS07515 at 1605.913 kb on - strand, within RR42_RS07515 at 1605.913 kb on - strand, within RR42_RS07515 at 1606.050 kb on + strand, within RR42_RS07515 at 1606.061 kb on + strand, within RR42_RS07515 at 1606.062 kb on - strand, within RR42_RS07515 at 1606.129 kb on + strand, within RR42_RS07515 at 1606.130 kb on - strand, within RR42_RS07515 at 1606.130 kb on - strand, within RR42_RS07515 at 1606.189 kb on + strand, within RR42_RS07515 at 1606.189 kb on + strand, within RR42_RS07515
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 1,602,885 + RR42_RS07505 0.34 +2.3 1,602,886 - RR42_RS07505 0.34 -0.5 1,602,957 + RR42_RS07505 0.39 +0.1 1,602,957 + RR42_RS07505 0.39 -0.7 1,602,958 - RR42_RS07505 0.40 -1.0 1,602,971 - RR42_RS07505 0.40 +0.1 1,603,046 - RR42_RS07505 0.46 +0.3 1,603,341 + RR42_RS07505 0.66 +0.8 1,603,342 - RR42_RS07505 0.66 +0.1 1,603,342 - RR42_RS07505 0.66 +0.1 1,603,404 + RR42_RS07505 0.71 +2.5 1,603,404 + RR42_RS07505 0.71 +1.2 1,603,404 + RR42_RS07505 0.71 +0.9 1,604,005 + -0.5 1,604,006 - -0.3 1,604,345 + RR42_RS07510 0.27 -0.1 1,604,346 - RR42_RS07510 0.27 +0.3 1,604,566 + RR42_RS07510 0.40 +0.3 1,604,566 + RR42_RS07510 0.40 +0.8 1,604,566 + RR42_RS07510 0.40 +0.6 1,604,567 - RR42_RS07510 0.40 -1.7 1,604,567 - RR42_RS07510 0.40 +1.0 1,604,567 - RR42_RS07510 0.40 -2.1 1,604,740 - RR42_RS07510 0.50 -0.7 1,605,389 + RR42_RS07510 0.89 +0.9 1,605,410 + RR42_RS07510 0.90 +0.8 1,605,410 + RR42_RS07510 0.90 +0.1 1,605,411 - RR42_RS07510 0.90 -0.3 1,605,595 + -0.4 1,605,778 - RR42_RS07515 0.10 -0.5 1,605,912 + RR42_RS07515 0.24 +0.6 1,605,912 + RR42_RS07515 0.24 +0.1 1,605,912 + RR42_RS07515 0.24 +0.5 1,605,913 - RR42_RS07515 0.24 +1.2 1,605,913 - RR42_RS07515 0.24 -1.5 1,606,050 + RR42_RS07515 0.39 -0.6 1,606,061 + RR42_RS07515 0.40 +0.8 1,606,062 - RR42_RS07515 0.40 -0.1 1,606,129 + RR42_RS07515 0.47 +0.8 1,606,130 - RR42_RS07515 0.48 -0.5 1,606,130 - RR42_RS07515 0.48 -0.3 1,606,189 + RR42_RS07515 0.54 +1.6 1,606,189 + RR42_RS07515 0.54 +0.5
Or see this region's nucleotide sequence