Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07360

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07350 and RR42_RS07355 are separated by 72 nucleotidesRR42_RS07355 and RR42_RS07360 are separated by 134 nucleotidesRR42_RS07360 and RR42_RS07365 are separated by 429 nucleotides RR42_RS07350: RR42_RS07350 - hypothetical protein, at 1,568,081 to 1,568,764 _RS07350 RR42_RS07355: RR42_RS07355 - LuxR family transcriptional regulator, at 1,568,837 to 1,569,469 _RS07355 RR42_RS07360: RR42_RS07360 - ATPase, at 1,569,604 to 1,572,192 _RS07360 RR42_RS07365: RR42_RS07365 - pyruvate dehydrogenase, at 1,572,622 to 1,575,309 _RS07365 Position (kb) 1569 1570 1571 1572 1573Strain fitness (log2 ratio) -3 -2 -1 0 1at 1568.636 kb on - strand, within RR42_RS07350at 1568.711 kb on + strandat 1568.711 kb on + strandat 1568.711 kb on + strandat 1568.712 kb on - strandat 1568.712 kb on - strandat 1570.245 kb on - strand, within RR42_RS07360at 1570.502 kb on + strand, within RR42_RS07360at 1570.644 kb on - strand, within RR42_RS07360at 1570.839 kb on - strand, within RR42_RS07360at 1570.839 kb on - strand, within RR42_RS07360at 1571.043 kb on - strand, within RR42_RS07360at 1571.546 kb on + strand, within RR42_RS07360at 1571.547 kb on - strand, within RR42_RS07360at 1572.359 kb on + strandat 1572.364 kb on + strandat 1572.960 kb on + strand, within RR42_RS07365

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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1,568,636 - RR42_RS07350 0.81 +0.9
1,568,711 + +0.7
1,568,711 + +0.9
1,568,711 + +0.2
1,568,712 - +0.0
1,568,712 - +0.1
1,570,245 - RR42_RS07360 0.25 +0.1
1,570,502 + RR42_RS07360 0.35 -1.5
1,570,644 - RR42_RS07360 0.40 -0.2
1,570,839 - RR42_RS07360 0.48 -0.6
1,570,839 - RR42_RS07360 0.48 -0.5
1,571,043 - RR42_RS07360 0.56 -1.3
1,571,546 + RR42_RS07360 0.75 -2.1
1,571,547 - RR42_RS07360 0.75 -2.5
1,572,359 + -2.9
1,572,364 + -0.2
1,572,960 + RR42_RS07365 0.13 -2.4

Or see this region's nucleotide sequence