Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS05950 and RR42_RS05955 are separated by 202 nucleotides RR42_RS05955 and RR42_RS05960 are separated by 186 nucleotides
RR42_RS05950: RR42_RS05950 - phospholipase A, at 1,309,239 to 1,310,471
_RS05950
RR42_RS05955: RR42_RS05955 - hypothetical protein, at 1,310,674 to 1,311,105
_RS05955
RR42_RS05960: RR42_RS05960 - multidrug DMT transporter permease, at 1,311,292 to 1,312,194
_RS05960
Position (kb)
1310
1311
1312 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1309.717 kb on + strand, within RR42_RS05950 at 1309.717 kb on + strand, within RR42_RS05950 at 1309.718 kb on - strand, within RR42_RS05950 at 1309.720 kb on + strand, within RR42_RS05950 at 1309.720 kb on + strand, within RR42_RS05950 at 1309.720 kb on + strand, within RR42_RS05950 at 1309.721 kb on - strand, within RR42_RS05950 at 1309.721 kb on - strand, within RR42_RS05950 at 1309.721 kb on - strand, within RR42_RS05950 at 1309.807 kb on + strand, within RR42_RS05950 at 1309.852 kb on + strand, within RR42_RS05950 at 1309.852 kb on + strand, within RR42_RS05950 at 1309.853 kb on - strand, within RR42_RS05950 at 1309.853 kb on - strand, within RR42_RS05950 at 1309.853 kb on - strand, within RR42_RS05950 at 1309.918 kb on + strand, within RR42_RS05950 at 1309.918 kb on + strand, within RR42_RS05950 at 1309.918 kb on + strand, within RR42_RS05950 at 1309.919 kb on - strand, within RR42_RS05950 at 1310.197 kb on + strand, within RR42_RS05950 at 1310.197 kb on + strand, within RR42_RS05950 at 1310.197 kb on + strand, within RR42_RS05950 at 1310.198 kb on - strand, within RR42_RS05950 at 1310.579 kb on - strand at 1310.598 kb on + strand at 1310.598 kb on + strand at 1310.598 kb on + strand at 1310.598 kb on + strand at 1310.599 kb on - strand at 1310.599 kb on - strand at 1310.599 kb on - strand at 1310.609 kb on + strand at 1310.609 kb on + strand at 1310.609 kb on + strand at 1310.610 kb on - strand at 1310.642 kb on + strand at 1310.695 kb on + strand at 1310.708 kb on + strand at 1310.933 kb on + strand, within RR42_RS05955 at 1311.120 kb on - strand at 1311.192 kb on + strand at 1311.192 kb on + strand at 1311.195 kb on + strand at 1311.195 kb on + strand at 1311.196 kb on - strand at 1311.196 kb on - strand at 1311.385 kb on + strand, within RR42_RS05960 at 1311.407 kb on - strand, within RR42_RS05960 at 1311.532 kb on + strand, within RR42_RS05960 at 1311.532 kb on + strand, within RR42_RS05960 at 1311.533 kb on - strand, within RR42_RS05960 at 1311.533 kb on - strand, within RR42_RS05960 at 1311.604 kb on + strand, within RR42_RS05960 at 1311.604 kb on + strand, within RR42_RS05960 at 1311.605 kb on - strand, within RR42_RS05960 at 1311.605 kb on - strand, within RR42_RS05960 at 1311.605 kb on - strand, within RR42_RS05960 at 1311.775 kb on + strand, within RR42_RS05960 at 1311.776 kb on - strand, within RR42_RS05960 at 1311.784 kb on + strand, within RR42_RS05960 at 1311.785 kb on - strand, within RR42_RS05960 at 1311.785 kb on - strand, within RR42_RS05960 at 1311.868 kb on + strand, within RR42_RS05960 at 1311.869 kb on - strand, within RR42_RS05960 at 1311.869 kb on - strand, within RR42_RS05960 at 1311.962 kb on + strand, within RR42_RS05960
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 1,309,717 + RR42_RS05950 0.39 -0.8 1,309,717 + RR42_RS05950 0.39 +0.5 1,309,718 - RR42_RS05950 0.39 -0.7 1,309,720 + RR42_RS05950 0.39 -0.3 1,309,720 + RR42_RS05950 0.39 -0.0 1,309,720 + RR42_RS05950 0.39 -0.1 1,309,721 - RR42_RS05950 0.39 +2.3 1,309,721 - RR42_RS05950 0.39 +0.5 1,309,721 - RR42_RS05950 0.39 +0.3 1,309,807 + RR42_RS05950 0.46 +0.0 1,309,852 + RR42_RS05950 0.50 +0.1 1,309,852 + RR42_RS05950 0.50 +0.1 1,309,853 - RR42_RS05950 0.50 -0.5 1,309,853 - RR42_RS05950 0.50 -0.2 1,309,853 - RR42_RS05950 0.50 +0.7 1,309,918 + RR42_RS05950 0.55 +0.1 1,309,918 + RR42_RS05950 0.55 -0.5 1,309,918 + RR42_RS05950 0.55 +0.2 1,309,919 - RR42_RS05950 0.55 +0.0 1,310,197 + RR42_RS05950 0.78 +0.5 1,310,197 + RR42_RS05950 0.78 -0.1 1,310,197 + RR42_RS05950 0.78 +0.4 1,310,198 - RR42_RS05950 0.78 -0.2 1,310,579 - +0.5 1,310,598 + -1.2 1,310,598 + -1.6 1,310,598 + +0.4 1,310,598 + +0.1 1,310,599 - -0.3 1,310,599 - -0.3 1,310,599 - -1.1 1,310,609 + -0.2 1,310,609 + -0.6 1,310,609 + -0.2 1,310,610 - +0.4 1,310,642 + -0.4 1,310,695 + -0.6 1,310,708 + -1.0 1,310,933 + RR42_RS05955 0.60 -1.8 1,311,120 - +0.1 1,311,192 + +0.8 1,311,192 + +0.1 1,311,195 + -0.4 1,311,195 + +1.2 1,311,196 - +0.1 1,311,196 - -0.5 1,311,385 + RR42_RS05960 0.10 -0.1 1,311,407 - RR42_RS05960 0.13 +0.8 1,311,532 + RR42_RS05960 0.27 -1.3 1,311,532 + RR42_RS05960 0.27 -0.5 1,311,533 - RR42_RS05960 0.27 -0.3 1,311,533 - RR42_RS05960 0.27 -0.5 1,311,604 + RR42_RS05960 0.35 +0.0 1,311,604 + RR42_RS05960 0.35 -1.5 1,311,605 - RR42_RS05960 0.35 +1.1 1,311,605 - RR42_RS05960 0.35 -0.2 1,311,605 - RR42_RS05960 0.35 +0.1 1,311,775 + RR42_RS05960 0.53 -0.8 1,311,776 - RR42_RS05960 0.54 -0.7 1,311,784 + RR42_RS05960 0.54 -0.8 1,311,785 - RR42_RS05960 0.55 +1.3 1,311,785 - RR42_RS05960 0.55 +0.3 1,311,868 + RR42_RS05960 0.64 -0.1 1,311,869 - RR42_RS05960 0.64 +0.0 1,311,869 - RR42_RS05960 0.64 +1.0 1,311,962 + RR42_RS05960 0.74 +0.5
Or see this region's nucleotide sequence