Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05955

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05950 and RR42_RS05955 are separated by 202 nucleotidesRR42_RS05955 and RR42_RS05960 are separated by 186 nucleotides RR42_RS05950: RR42_RS05950 - phospholipase A, at 1,309,239 to 1,310,471 _RS05950 RR42_RS05955: RR42_RS05955 - hypothetical protein, at 1,310,674 to 1,311,105 _RS05955 RR42_RS05960: RR42_RS05960 - multidrug DMT transporter permease, at 1,311,292 to 1,312,194 _RS05960 Position (kb) 1310 1311 1312Strain fitness (log2 ratio) -2 -1 0 1 2at 1309.717 kb on + strand, within RR42_RS05950at 1309.717 kb on + strand, within RR42_RS05950at 1309.718 kb on - strand, within RR42_RS05950at 1309.720 kb on + strand, within RR42_RS05950at 1309.720 kb on + strand, within RR42_RS05950at 1309.720 kb on + strand, within RR42_RS05950at 1309.721 kb on - strand, within RR42_RS05950at 1309.721 kb on - strand, within RR42_RS05950at 1309.721 kb on - strand, within RR42_RS05950at 1309.807 kb on + strand, within RR42_RS05950at 1309.852 kb on + strand, within RR42_RS05950at 1309.852 kb on + strand, within RR42_RS05950at 1309.853 kb on - strand, within RR42_RS05950at 1309.853 kb on - strand, within RR42_RS05950at 1309.853 kb on - strand, within RR42_RS05950at 1309.918 kb on + strand, within RR42_RS05950at 1309.918 kb on + strand, within RR42_RS05950at 1309.918 kb on + strand, within RR42_RS05950at 1309.919 kb on - strand, within RR42_RS05950at 1310.197 kb on + strand, within RR42_RS05950at 1310.197 kb on + strand, within RR42_RS05950at 1310.197 kb on + strand, within RR42_RS05950at 1310.198 kb on - strand, within RR42_RS05950at 1310.579 kb on - strandat 1310.598 kb on + strandat 1310.598 kb on + strandat 1310.598 kb on + strandat 1310.598 kb on + strandat 1310.599 kb on - strandat 1310.599 kb on - strandat 1310.599 kb on - strandat 1310.609 kb on + strandat 1310.609 kb on + strandat 1310.609 kb on + strandat 1310.610 kb on - strandat 1310.642 kb on + strandat 1310.695 kb on + strandat 1310.708 kb on + strandat 1310.933 kb on + strand, within RR42_RS05955at 1311.120 kb on - strandat 1311.192 kb on + strandat 1311.192 kb on + strandat 1311.195 kb on + strandat 1311.195 kb on + strandat 1311.196 kb on - strandat 1311.196 kb on - strandat 1311.385 kb on + strand, within RR42_RS05960at 1311.407 kb on - strand, within RR42_RS05960at 1311.532 kb on + strand, within RR42_RS05960at 1311.532 kb on + strand, within RR42_RS05960at 1311.533 kb on - strand, within RR42_RS05960at 1311.533 kb on - strand, within RR42_RS05960at 1311.604 kb on + strand, within RR42_RS05960at 1311.604 kb on + strand, within RR42_RS05960at 1311.605 kb on - strand, within RR42_RS05960at 1311.605 kb on - strand, within RR42_RS05960at 1311.605 kb on - strand, within RR42_RS05960at 1311.775 kb on + strand, within RR42_RS05960at 1311.776 kb on - strand, within RR42_RS05960at 1311.784 kb on + strand, within RR42_RS05960at 1311.785 kb on - strand, within RR42_RS05960at 1311.785 kb on - strand, within RR42_RS05960at 1311.868 kb on + strand, within RR42_RS05960at 1311.869 kb on - strand, within RR42_RS05960at 1311.869 kb on - strand, within RR42_RS05960at 1311.962 kb on + strand, within RR42_RS05960

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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1,309,717 + RR42_RS05950 0.39 -0.8
1,309,717 + RR42_RS05950 0.39 +0.5
1,309,718 - RR42_RS05950 0.39 -0.7
1,309,720 + RR42_RS05950 0.39 -0.3
1,309,720 + RR42_RS05950 0.39 -0.0
1,309,720 + RR42_RS05950 0.39 -0.1
1,309,721 - RR42_RS05950 0.39 +2.3
1,309,721 - RR42_RS05950 0.39 +0.5
1,309,721 - RR42_RS05950 0.39 +0.3
1,309,807 + RR42_RS05950 0.46 +0.0
1,309,852 + RR42_RS05950 0.50 +0.1
1,309,852 + RR42_RS05950 0.50 +0.1
1,309,853 - RR42_RS05950 0.50 -0.5
1,309,853 - RR42_RS05950 0.50 -0.2
1,309,853 - RR42_RS05950 0.50 +0.7
1,309,918 + RR42_RS05950 0.55 +0.1
1,309,918 + RR42_RS05950 0.55 -0.5
1,309,918 + RR42_RS05950 0.55 +0.2
1,309,919 - RR42_RS05950 0.55 +0.0
1,310,197 + RR42_RS05950 0.78 +0.5
1,310,197 + RR42_RS05950 0.78 -0.1
1,310,197 + RR42_RS05950 0.78 +0.4
1,310,198 - RR42_RS05950 0.78 -0.2
1,310,579 - +0.5
1,310,598 + -1.2
1,310,598 + -1.6
1,310,598 + +0.4
1,310,598 + +0.1
1,310,599 - -0.3
1,310,599 - -0.3
1,310,599 - -1.1
1,310,609 + -0.2
1,310,609 + -0.6
1,310,609 + -0.2
1,310,610 - +0.4
1,310,642 + -0.4
1,310,695 + -0.6
1,310,708 + -1.0
1,310,933 + RR42_RS05955 0.60 -1.8
1,311,120 - +0.1
1,311,192 + +0.8
1,311,192 + +0.1
1,311,195 + -0.4
1,311,195 + +1.2
1,311,196 - +0.1
1,311,196 - -0.5
1,311,385 + RR42_RS05960 0.10 -0.1
1,311,407 - RR42_RS05960 0.13 +0.8
1,311,532 + RR42_RS05960 0.27 -1.3
1,311,532 + RR42_RS05960 0.27 -0.5
1,311,533 - RR42_RS05960 0.27 -0.3
1,311,533 - RR42_RS05960 0.27 -0.5
1,311,604 + RR42_RS05960 0.35 +0.0
1,311,604 + RR42_RS05960 0.35 -1.5
1,311,605 - RR42_RS05960 0.35 +1.1
1,311,605 - RR42_RS05960 0.35 -0.2
1,311,605 - RR42_RS05960 0.35 +0.1
1,311,775 + RR42_RS05960 0.53 -0.8
1,311,776 - RR42_RS05960 0.54 -0.7
1,311,784 + RR42_RS05960 0.54 -0.8
1,311,785 - RR42_RS05960 0.55 +1.3
1,311,785 - RR42_RS05960 0.55 +0.3
1,311,868 + RR42_RS05960 0.64 -0.1
1,311,869 - RR42_RS05960 0.64 +0.0
1,311,869 - RR42_RS05960 0.64 +1.0
1,311,962 + RR42_RS05960 0.74 +0.5

Or see this region's nucleotide sequence