Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05905

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05900 and RR42_RS05905 are separated by 122 nucleotidesRR42_RS05905 and RR42_RS05910 are separated by 93 nucleotides RR42_RS05900: RR42_RS05900 - peptidase, at 1,299,844 to 1,301,529 _RS05900 RR42_RS05905: RR42_RS05905 - hypothetical protein, at 1,301,652 to 1,302,044 _RS05905 RR42_RS05910: RR42_RS05910 - DNA repair protein, at 1,302,138 to 1,303,862 _RS05910 Position (kb) 1301 1302 1303Strain fitness (log2 ratio) -1 0 1 2at 1300.714 kb on - strand, within RR42_RS05900at 1300.761 kb on + strand, within RR42_RS05900at 1300.761 kb on + strand, within RR42_RS05900at 1300.761 kb on + strand, within RR42_RS05900at 1300.761 kb on + strand, within RR42_RS05900at 1300.761 kb on + strand, within RR42_RS05900at 1300.761 kb on + strand, within RR42_RS05900at 1300.762 kb on - strand, within RR42_RS05900at 1300.762 kb on - strand, within RR42_RS05900at 1300.762 kb on - strand, within RR42_RS05900at 1300.762 kb on - strand, within RR42_RS05900at 1300.940 kb on + strand, within RR42_RS05900at 1301.046 kb on - strand, within RR42_RS05900at 1301.268 kb on + strand, within RR42_RS05900at 1301.269 kb on - strand, within RR42_RS05900at 1301.269 kb on - strand, within RR42_RS05900at 1301.379 kb on - strandat 1301.533 kb on + strandat 1301.533 kb on + strandat 1301.534 kb on - strandat 1301.534 kb on - strandat 1301.572 kb on + strandat 1301.925 kb on - strandat 1301.931 kb on + strand, within RR42_RS05905at 1301.931 kb on + strand, within RR42_RS05905at 1301.931 kb on + strand, within RR42_RS05905at 1303.010 kb on - strand, within RR42_RS05910

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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1,300,714 - RR42_RS05900 0.52 +0.5
1,300,761 + RR42_RS05900 0.54 +1.7
1,300,761 + RR42_RS05900 0.54 -0.0
1,300,761 + RR42_RS05900 0.54 +0.1
1,300,761 + RR42_RS05900 0.54 -0.6
1,300,761 + RR42_RS05900 0.54 +0.3
1,300,761 + RR42_RS05900 0.54 +0.2
1,300,762 - RR42_RS05900 0.54 +0.3
1,300,762 - RR42_RS05900 0.54 +0.2
1,300,762 - RR42_RS05900 0.54 +0.4
1,300,762 - RR42_RS05900 0.54 +1.1
1,300,940 + RR42_RS05900 0.65 +0.2
1,301,046 - RR42_RS05900 0.71 +0.5
1,301,268 + RR42_RS05900 0.84 +0.0
1,301,269 - RR42_RS05900 0.85 +0.1
1,301,269 - RR42_RS05900 0.85 +0.6
1,301,379 - -0.7
1,301,533 + -0.1
1,301,533 + +0.0
1,301,534 - -0.1
1,301,534 - +1.0
1,301,572 + +1.0
1,301,925 - +0.5
1,301,931 + RR42_RS05905 0.71 -0.2
1,301,931 + RR42_RS05905 0.71 +1.8
1,301,931 + RR42_RS05905 0.71 +1.4
1,303,010 - RR42_RS05910 0.51 -0.4

Or see this region's nucleotide sequence