Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05445

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05435 and RR42_RS05440 overlap by 1 nucleotidesRR42_RS05440 and RR42_RS05445 are separated by 97 nucleotidesRR42_RS05445 and RR42_RS05450 are separated by 154 nucleotidesRR42_RS05450 and RR42_RS05455 are separated by 42 nucleotides RR42_RS05435: RR42_RS05435 - acetolactate synthase 3 catalytic subunit, at 1,199,221 to 1,200,981 _RS05435 RR42_RS05440: RR42_RS05440 - acetolactate synthase, at 1,200,981 to 1,201,472 _RS05440 RR42_RS05445: RR42_RS05445 - ketol-acid reductoisomerase, at 1,201,570 to 1,202,586 _RS05445 RR42_RS05450: RR42_RS05450 - phosphatidylserine decarboxylase, at 1,202,741 to 1,203,385 _RS05450 RR42_RS05455: RR42_RS05455 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 1,203,428 to 1,204,330 _RS05455 Position (kb) 1201 1202 1203Strain fitness (log2 ratio) -1 0 1at 1202.584 kb on + strandat 1202.585 kb on - strandat 1202.731 kb on + strandat 1202.731 kb on + strandat 1203.383 kb on + strandat 1203.383 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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1,202,584 + +0.1
1,202,585 - +0.8
1,202,731 + -0.4
1,202,731 + +0.1
1,203,383 + -1.3
1,203,383 + -0.3

Or see this region's nucleotide sequence