Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS05150 and RR42_RS05155 are separated by 172 nucleotides RR42_RS05155 and RR42_RS05160 are separated by 42 nucleotides RR42_RS05160 and RR42_RS05165 are separated by 248 nucleotides
RR42_RS05150: RR42_RS05150 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase, at 1,135,076 to 1,136,014
_RS05150
RR42_RS05155: RR42_RS05155 - hydroxyacid dehydrogenase, at 1,136,187 to 1,137,137
_RS05155
RR42_RS05160: RR42_RS05160 - glyoxalase, at 1,137,180 to 1,137,653
_RS05160
RR42_RS05165: RR42_RS05165 - GntR family transcriptional regulator, at 1,137,902 to 1,138,567
_RS05165
Position (kb) 1136
1137
1138 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1135.292 kb on - strand, within RR42_RS05150 at 1135.292 kb on - strand, within RR42_RS05150 at 1135.399 kb on + strand, within RR42_RS05150 at 1135.440 kb on + strand, within RR42_RS05150 at 1135.489 kb on + strand, within RR42_RS05150 at 1135.492 kb on - strand, within RR42_RS05150 at 1135.653 kb on + strand, within RR42_RS05150 at 1135.654 kb on - strand, within RR42_RS05150 at 1135.654 kb on - strand, within RR42_RS05150 at 1135.761 kb on + strand, within RR42_RS05150 at 1135.762 kb on - strand, within RR42_RS05150 at 1135.938 kb on + strand at 1135.938 kb on + strand at 1135.938 kb on + strand at 1135.945 kb on + strand at 1135.989 kb on + strand at 1135.989 kb on + strand at 1135.989 kb on + strand at 1135.990 kb on - strand at 1136.218 kb on + strand at 1136.224 kb on + strand at 1136.421 kb on + strand, within RR42_RS05155 at 1136.489 kb on + strand, within RR42_RS05155 at 1136.490 kb on - strand, within RR42_RS05155 at 1136.648 kb on + strand, within RR42_RS05155 at 1136.649 kb on - strand, within RR42_RS05155 at 1136.701 kb on - strand, within RR42_RS05155 at 1136.897 kb on + strand, within RR42_RS05155 at 1136.897 kb on + strand, within RR42_RS05155 at 1136.898 kb on - strand, within RR42_RS05155 at 1137.181 kb on + strand at 1137.326 kb on - strand, within RR42_RS05160 at 1137.326 kb on - strand at 1137.326 kb on - strand, within RR42_RS05160 at 1137.326 kb on - strand, within RR42_RS05160 at 1137.326 kb on - strand, within RR42_RS05160 at 1137.326 kb on - strand, within RR42_RS05160 at 1137.361 kb on + strand, within RR42_RS05160 at 1137.361 kb on + strand, within RR42_RS05160 at 1137.361 kb on + strand, within RR42_RS05160 at 1137.361 kb on + strand, within RR42_RS05160 at 1137.361 kb on + strand, within RR42_RS05160 at 1137.361 kb on + strand, within RR42_RS05160 at 1137.362 kb on - strand, within RR42_RS05160 at 1137.362 kb on - strand, within RR42_RS05160 at 1137.362 kb on - strand, within RR42_RS05160 at 1137.362 kb on - strand, within RR42_RS05160 at 1137.362 kb on - strand, within RR42_RS05160 at 1137.526 kb on + strand, within RR42_RS05160 at 1137.589 kb on + strand, within RR42_RS05160 at 1137.590 kb on - strand, within RR42_RS05160 at 1137.801 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 1,135,292 - RR42_RS05150 0.23 -0.0 1,135,292 - RR42_RS05150 0.23 -1.6 1,135,399 + RR42_RS05150 0.34 +0.4 1,135,440 + RR42_RS05150 0.39 +0.3 1,135,489 + RR42_RS05150 0.44 -0.1 1,135,492 - RR42_RS05150 0.44 +2.1 1,135,653 + RR42_RS05150 0.61 +1.5 1,135,654 - RR42_RS05150 0.62 +0.2 1,135,654 - RR42_RS05150 0.62 -0.5 1,135,761 + RR42_RS05150 0.73 -0.4 1,135,762 - RR42_RS05150 0.73 +1.0 1,135,938 + +1.6 1,135,938 + +0.2 1,135,938 + +0.2 1,135,945 + -0.7 1,135,989 + +0.7 1,135,989 + +0.9 1,135,989 + +0.3 1,135,990 - -0.7 1,136,218 + -0.1 1,136,224 + -0.8 1,136,421 + RR42_RS05155 0.25 +0.2 1,136,489 + RR42_RS05155 0.32 -0.2 1,136,490 - RR42_RS05155 0.32 -0.1 1,136,648 + RR42_RS05155 0.48 +0.9 1,136,649 - RR42_RS05155 0.49 +0.9 1,136,701 - RR42_RS05155 0.54 -0.0 1,136,897 + RR42_RS05155 0.75 +0.5 1,136,897 + RR42_RS05155 0.75 +1.1 1,136,898 - RR42_RS05155 0.75 +0.8 1,137,181 + -2.3 1,137,326 - RR42_RS05160 0.31 +1.2 1,137,326 - +0.1 1,137,326 - RR42_RS05160 0.31 +0.7 1,137,326 - RR42_RS05160 0.31 +0.5 1,137,326 - RR42_RS05160 0.31 -0.9 1,137,326 - RR42_RS05160 0.31 -1.1 1,137,361 + RR42_RS05160 0.38 -1.8 1,137,361 + RR42_RS05160 0.38 -0.0 1,137,361 + RR42_RS05160 0.38 -0.4 1,137,361 + RR42_RS05160 0.38 +0.1 1,137,361 + RR42_RS05160 0.38 -0.3 1,137,361 + RR42_RS05160 0.38 +0.1 1,137,362 - RR42_RS05160 0.38 +0.1 1,137,362 - RR42_RS05160 0.38 -0.2 1,137,362 - RR42_RS05160 0.38 -0.4 1,137,362 - RR42_RS05160 0.38 +0.6 1,137,362 - RR42_RS05160 0.38 +0.5 1,137,526 + RR42_RS05160 0.73 +1.4 1,137,589 + RR42_RS05160 0.86 +0.1 1,137,590 - RR42_RS05160 0.86 +0.0 1,137,801 - -1.4
Or see this region's nucleotide sequence