Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03015

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03010 and RR42_RS03015 are separated by 45 nucleotidesRR42_RS03015 and RR42_RS03020 are separated by 354 nucleotidesRR42_RS03020 and RR42_RS03025 are separated by 4 nucleotides RR42_RS03010: RR42_RS03010 - acetyl-CoA acetyltransferase, at 666,529 to 667,707 _RS03010 RR42_RS03015: RR42_RS03015 - enoyl-CoA hydratase, at 667,753 to 668,550 _RS03015 RR42_RS03020: RR42_RS03020 - MarR family transcriptional regulator, at 668,905 to 669,366 _RS03020 RR42_RS03025: RR42_RS03025 - Inner membrane protein (FUSC-like) required for 4-hydroxybenzoate transport, together with NodT, MFP, and DUF1656 proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03030) (from data), at 669,371 to 671,365 _RS03025 Position (kb) 667 668 669Strain fitness (log2 ratio) -1 0 1at 666.770 kb on + strand, within RR42_RS03010at 667.379 kb on + strand, within RR42_RS03010at 667.379 kb on + strand, within RR42_RS03010at 667.867 kb on - strand, within RR42_RS03015at 667.969 kb on + strand, within RR42_RS03015at 667.969 kb on + strand, within RR42_RS03015at 667.972 kb on + strand, within RR42_RS03015at 667.972 kb on + strand, within RR42_RS03015at 667.972 kb on + strand, within RR42_RS03015at 667.973 kb on - strand, within RR42_RS03015at 668.198 kb on - strand, within RR42_RS03015at 668.729 kb on - strandat 668.730 kb on + strandat 668.731 kb on - strandat 668.838 kb on - strandat 669.085 kb on + strand, within RR42_RS03020at 669.086 kb on - strand, within RR42_RS03020at 669.364 kb on + strandat 669.364 kb on + strandat 669.455 kb on + strandat 669.497 kb on + strandat 669.497 kb on + strandat 669.498 kb on - strandat 669.498 kb on - strandat 669.498 kb on - strandat 669.500 kb on - strandat 669.500 kb on - strandat 669.500 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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666,770 + RR42_RS03010 0.20 -0.5
667,379 + RR42_RS03010 0.72 +0.1
667,379 + RR42_RS03010 0.72 +0.0
667,867 - RR42_RS03015 0.14 +1.6
667,969 + RR42_RS03015 0.27 +0.6
667,969 + RR42_RS03015 0.27 +0.2
667,972 + RR42_RS03015 0.27 -0.1
667,972 + RR42_RS03015 0.27 +0.3
667,972 + RR42_RS03015 0.27 -0.6
667,973 - RR42_RS03015 0.28 +0.0
668,198 - RR42_RS03015 0.56 +0.4
668,729 - -0.5
668,730 + -0.3
668,731 - -0.6
668,838 - +0.1
669,085 + RR42_RS03020 0.39 +0.7
669,086 - RR42_RS03020 0.39 -0.2
669,364 + -0.6
669,364 + +0.4
669,455 + -0.9
669,497 + -0.4
669,497 + -0.3
669,498 - +0.2
669,498 - -1.5
669,498 - -0.6
669,500 - +0.5
669,500 - +0.2
669,500 - +0.8

Or see this region's nucleotide sequence