Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03005

Experiment: L-Valine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS03000 and RR42_RS03005 are separated by 162 nucleotidesRR42_RS03005 and RR42_RS03010 are separated by 44 nucleotides RR42_RS03000: RR42_RS03000 - ABC transporter substrate-binding protein, at 664,589 to 665,557 _RS03000 RR42_RS03005: RR42_RS03005 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 665,720 to 666,484 _RS03005 RR42_RS03010: RR42_RS03010 - acetyl-CoA acetyltransferase, at 666,529 to 667,707 _RS03010 Position (kb) 665 666 667Strain fitness (log2 ratio) -1 0 1 2at 664.799 kb on + strand, within RR42_RS03000at 665.097 kb on + strand, within RR42_RS03000at 665.097 kb on + strand, within RR42_RS03000at 665.098 kb on - strand, within RR42_RS03000at 665.232 kb on + strand, within RR42_RS03000at 665.247 kb on + strand, within RR42_RS03000at 665.256 kb on + strand, within RR42_RS03000at 665.256 kb on + strand, within RR42_RS03000at 665.256 kb on + strand, within RR42_RS03000at 665.257 kb on - strand, within RR42_RS03000at 665.257 kb on - strand, within RR42_RS03000at 665.298 kb on + strand, within RR42_RS03000at 665.299 kb on - strand, within RR42_RS03000at 665.539 kb on + strandat 665.540 kb on - strandat 665.791 kb on + strandat 665.792 kb on - strandat 665.902 kb on + strand, within RR42_RS03005at 665.903 kb on - strand, within RR42_RS03005at 666.006 kb on + strand, within RR42_RS03005at 666.033 kb on + strand, within RR42_RS03005at 666.033 kb on + strand, within RR42_RS03005at 666.489 kb on + strandat 666.770 kb on + strand, within RR42_RS03010at 667.379 kb on + strand, within RR42_RS03010at 667.379 kb on + strand, within RR42_RS03010

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
remove
664,799 + RR42_RS03000 0.22 +0.2
665,097 + RR42_RS03000 0.52 -0.6
665,097 + RR42_RS03000 0.52 +1.3
665,098 - RR42_RS03000 0.53 +0.2
665,232 + RR42_RS03000 0.66 -1.1
665,247 + RR42_RS03000 0.68 +2.0
665,256 + RR42_RS03000 0.69 +0.3
665,256 + RR42_RS03000 0.69 +1.3
665,256 + RR42_RS03000 0.69 +0.5
665,257 - RR42_RS03000 0.69 -1.0
665,257 - RR42_RS03000 0.69 -0.6
665,298 + RR42_RS03000 0.73 +0.3
665,299 - RR42_RS03000 0.73 +0.2
665,539 + +0.3
665,540 - +0.8
665,791 + +1.3
665,792 - -0.1
665,902 + RR42_RS03005 0.24 -0.2
665,903 - RR42_RS03005 0.24 +0.5
666,006 + RR42_RS03005 0.37 +1.0
666,033 + RR42_RS03005 0.41 -0.0
666,033 + RR42_RS03005 0.41 -0.2
666,489 + +0.5
666,770 + RR42_RS03010 0.20 -0.5
667,379 + RR42_RS03010 0.72 +0.1
667,379 + RR42_RS03010 0.72 +0.0

Or see this region's nucleotide sequence