Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02785

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02780 and RR42_RS02785 are separated by 20 nucleotidesRR42_RS02785 and RR42_RS02790 are separated by 158 nucleotides RR42_RS02780: RR42_RS02780 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 619,423 to 620,472 _RS02780 RR42_RS02785: RR42_RS02785 - dimethyladenosine transferase, at 620,493 to 621,314 _RS02785 RR42_RS02790: RR42_RS02790 - tryptophanyl-tRNA synthetase, at 621,473 to 622,495 _RS02790 Position (kb) 620 621 622Strain fitness (log2 ratio) -3 -2 -1 0 1at 620.459 kb on + strandat 620.488 kb on + strandat 620.488 kb on + strandat 620.489 kb on - strandat 620.489 kb on - strandat 620.492 kb on + strandat 620.492 kb on + strandat 620.506 kb on + strandat 620.985 kb on + strand, within RR42_RS02785at 620.985 kb on + strand, within RR42_RS02785at 621.185 kb on + strand, within RR42_RS02785at 621.185 kb on + strand, within RR42_RS02785at 621.186 kb on - strand, within RR42_RS02785at 621.274 kb on - strandat 621.308 kb on + strandat 621.309 kb on - strandat 621.458 kb on - strandat 621.554 kb on + strandat 621.555 kb on - strandat 621.555 kb on - strandat 621.605 kb on + strand, within RR42_RS02790at 621.779 kb on + strand, within RR42_RS02790at 621.779 kb on + strand, within RR42_RS02790at 621.779 kb on + strand, within RR42_RS02790at 621.779 kb on + strand, within RR42_RS02790at 622.160 kb on + strand, within RR42_RS02790at 622.160 kb on + strand, within RR42_RS02790at 622.222 kb on + strand, within RR42_RS02790at 622.223 kb on - strand, within RR42_RS02790at 622.223 kb on - strand, within RR42_RS02790at 622.223 kb on - strand, within RR42_RS02790at 622.227 kb on - strand, within RR42_RS02790

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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620,459 + -0.7
620,488 + -2.7
620,488 + +0.1
620,489 - -1.1
620,489 - -1.1
620,492 + -0.7
620,492 + +0.0
620,506 + -0.2
620,985 + RR42_RS02785 0.60 -0.5
620,985 + RR42_RS02785 0.60 -0.4
621,185 + RR42_RS02785 0.84 -3.4
621,185 + RR42_RS02785 0.84 -1.9
621,186 - RR42_RS02785 0.84 -1.2
621,274 - +0.5
621,308 + +0.6
621,309 - -0.5
621,458 - +0.8
621,554 + -0.6
621,555 - +0.4
621,555 - +0.5
621,605 + RR42_RS02790 0.13 +0.7
621,779 + RR42_RS02790 0.30 -0.8
621,779 + RR42_RS02790 0.30 -0.3
621,779 + RR42_RS02790 0.30 +0.7
621,779 + RR42_RS02790 0.30 -0.4
622,160 + RR42_RS02790 0.67 +0.4
622,160 + RR42_RS02790 0.67 +1.4
622,222 + RR42_RS02790 0.73 +0.3
622,223 - RR42_RS02790 0.73 -0.7
622,223 - RR42_RS02790 0.73 -0.7
622,223 - RR42_RS02790 0.73 -1.2
622,227 - RR42_RS02790 0.74 -0.3

Or see this region's nucleotide sequence