Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02520 and RR42_RS02525 are separated by 54 nucleotides RR42_RS02525 and RR42_RS02530 are separated by 26 nucleotides RR42_RS02530 and RR42_RS02535 are separated by 177 nucleotides
RR42_RS02520: RR42_RS02520 - hypothetical protein, at 567,678 to 568,634
_RS02520
RR42_RS02525: RR42_RS02525 - enoyl-CoA hydratase, at 568,689 to 569,465
_RS02525
RR42_RS02530: RR42_RS02530 - acyl-CoA hydrolase, at 569,492 to 569,914
_RS02530
RR42_RS02535: RR42_RS02535 - metal ABC transporter permease, at 570,092 to 571,987
_RS02535
Position (kb) 568
569
570 Strain fitness (log2 ratio) -2
-1
0
1
2 at 567.828 kb on + strand, within RR42_RS02520 at 567.828 kb on + strand, within RR42_RS02520 at 567.978 kb on + strand, within RR42_RS02520 at 567.979 kb on - strand, within RR42_RS02520 at 567.979 kb on - strand, within RR42_RS02520 at 568.202 kb on + strand, within RR42_RS02520 at 568.202 kb on + strand, within RR42_RS02520 at 568.203 kb on - strand, within RR42_RS02520 at 568.230 kb on + strand, within RR42_RS02520 at 568.231 kb on - strand, within RR42_RS02520 at 568.236 kb on + strand, within RR42_RS02520 at 568.236 kb on + strand, within RR42_RS02520 at 568.237 kb on - strand, within RR42_RS02520 at 568.284 kb on + strand, within RR42_RS02520 at 568.326 kb on - strand, within RR42_RS02520 at 568.326 kb on - strand, within RR42_RS02520 at 568.455 kb on + strand, within RR42_RS02520 at 568.455 kb on + strand, within RR42_RS02520 at 568.494 kb on + strand, within RR42_RS02520 at 568.495 kb on - strand, within RR42_RS02520 at 568.602 kb on + strand at 568.603 kb on - strand at 568.603 kb on - strand at 568.777 kb on - strand, within RR42_RS02525 at 568.777 kb on - strand, within RR42_RS02525 at 568.936 kb on + strand, within RR42_RS02525 at 568.936 kb on + strand, within RR42_RS02525 at 568.937 kb on - strand, within RR42_RS02525 at 569.046 kb on + strand, within RR42_RS02525 at 569.046 kb on + strand, within RR42_RS02525 at 569.047 kb on - strand, within RR42_RS02525 at 569.047 kb on - strand, within RR42_RS02525 at 569.047 kb on - strand, within RR42_RS02525 at 569.276 kb on - strand, within RR42_RS02525 at 569.464 kb on - strand at 569.464 kb on - strand at 569.464 kb on - strand at 569.542 kb on + strand, within RR42_RS02530 at 569.542 kb on + strand, within RR42_RS02530 at 569.559 kb on + strand, within RR42_RS02530 at 569.559 kb on + strand, within RR42_RS02530 at 569.559 kb on + strand, within RR42_RS02530 at 569.559 kb on + strand, within RR42_RS02530 at 569.560 kb on - strand, within RR42_RS02530 at 569.619 kb on + strand, within RR42_RS02530 at 569.620 kb on - strand, within RR42_RS02530 at 569.633 kb on + strand, within RR42_RS02530 at 570.042 kb on + strand at 570.046 kb on + strand at 570.046 kb on + strand at 570.071 kb on + strand at 570.091 kb on + strand at 570.101 kb on + strand at 570.102 kb on - strand at 570.106 kb on + strand at 570.106 kb on + strand at 570.107 kb on - strand at 570.107 kb on - strand at 570.203 kb on + strand at 570.203 kb on + strand at 570.203 kb on + strand at 570.216 kb on - strand at 570.216 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 567,828 + RR42_RS02520 0.16 +0.2 567,828 + RR42_RS02520 0.16 +1.0 567,978 + RR42_RS02520 0.31 +0.4 567,979 - RR42_RS02520 0.31 -0.3 567,979 - RR42_RS02520 0.31 -0.2 568,202 + RR42_RS02520 0.55 +1.0 568,202 + RR42_RS02520 0.55 +0.7 568,203 - RR42_RS02520 0.55 -0.8 568,230 + RR42_RS02520 0.58 -0.1 568,231 - RR42_RS02520 0.58 +0.7 568,236 + RR42_RS02520 0.58 -0.5 568,236 + RR42_RS02520 0.58 -0.4 568,237 - RR42_RS02520 0.58 +0.2 568,284 + RR42_RS02520 0.63 -0.5 568,326 - RR42_RS02520 0.68 +0.1 568,326 - RR42_RS02520 0.68 -0.3 568,455 + RR42_RS02520 0.81 +0.2 568,455 + RR42_RS02520 0.81 +1.3 568,494 + RR42_RS02520 0.85 +0.4 568,495 - RR42_RS02520 0.85 +1.7 568,602 + +1.1 568,603 - -1.0 568,603 - +0.5 568,777 - RR42_RS02525 0.11 -0.2 568,777 - RR42_RS02525 0.11 -0.2 568,936 + RR42_RS02525 0.32 +0.5 568,936 + RR42_RS02525 0.32 +0.4 568,937 - RR42_RS02525 0.32 +0.5 569,046 + RR42_RS02525 0.46 +0.5 569,046 + RR42_RS02525 0.46 -0.2 569,047 - RR42_RS02525 0.46 -1.3 569,047 - RR42_RS02525 0.46 -1.5 569,047 - RR42_RS02525 0.46 -0.2 569,276 - RR42_RS02525 0.76 +0.9 569,464 - -0.7 569,464 - -1.0 569,464 - -1.4 569,542 + RR42_RS02530 0.12 +0.1 569,542 + RR42_RS02530 0.12 -1.4 569,559 + RR42_RS02530 0.16 +1.1 569,559 + RR42_RS02530 0.16 +0.8 569,559 + RR42_RS02530 0.16 +0.3 569,559 + RR42_RS02530 0.16 -0.4 569,560 - RR42_RS02530 0.16 +0.8 569,619 + RR42_RS02530 0.30 +2.4 569,620 - RR42_RS02530 0.30 -1.3 569,633 + RR42_RS02530 0.33 +1.3 570,042 + +0.7 570,046 + +0.2 570,046 + +1.2 570,071 + -0.2 570,091 + +0.1 570,101 + -0.3 570,102 - -0.2 570,106 + +0.6 570,106 + -0.5 570,107 - +0.1 570,107 - -1.0 570,203 + +0.4 570,203 + +2.3 570,203 + -2.2 570,216 - -1.1 570,216 - -0.2
Or see this region's nucleotide sequence