Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00925

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00920 and RR42_RS00925 are separated by 273 nucleotidesRR42_RS00925 and RR42_RS00930 overlap by 11 nucleotides RR42_RS00920: RR42_RS00920 - dienelactone hydrolase, at 219,622 to 220,527 _RS00920 RR42_RS00925: RR42_RS00925 - adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA, at 220,801 to 222,288 _RS00925 RR42_RS00930: RR42_RS00930 - 8-amino-7-oxononanoate synthase, at 222,278 to 223,495 _RS00930 Position (kb) 220 221 222 223Strain fitness (log2 ratio) -2 -1 0 1 2at 219.950 kb on - strand, within RR42_RS00920at 220.072 kb on + strand, within RR42_RS00920at 220.072 kb on + strand, within RR42_RS00920at 220.072 kb on + strand, within RR42_RS00920at 220.072 kb on + strand, within RR42_RS00920at 220.073 kb on - strand, within RR42_RS00920at 220.073 kb on - strand, within RR42_RS00920at 220.073 kb on - strand, within RR42_RS00920at 220.073 kb on - strand, within RR42_RS00920at 220.073 kb on - strand, within RR42_RS00920at 220.090 kb on + strand, within RR42_RS00920at 220.090 kb on + strand, within RR42_RS00920at 220.091 kb on - strand, within RR42_RS00920at 220.091 kb on - strand, within RR42_RS00920at 220.091 kb on - strand, within RR42_RS00920at 220.168 kb on + strand, within RR42_RS00920at 220.169 kb on - strand, within RR42_RS00920at 220.318 kb on + strand, within RR42_RS00920at 220.318 kb on + strand, within RR42_RS00920at 220.318 kb on + strand, within RR42_RS00920at 220.319 kb on - strand, within RR42_RS00920at 220.358 kb on - strand, within RR42_RS00920at 220.358 kb on - strand, within RR42_RS00920at 220.405 kb on + strand, within RR42_RS00920at 220.431 kb on + strand, within RR42_RS00920at 220.431 kb on + strand, within RR42_RS00920at 220.431 kb on + strand, within RR42_RS00920at 220.431 kb on + strand, within RR42_RS00920at 220.432 kb on - strand, within RR42_RS00920at 220.699 kb on + strandat 220.699 kb on + strandat 220.700 kb on - strandat 220.700 kb on - strandat 220.987 kb on + strand, within RR42_RS00925at 220.988 kb on - strand, within RR42_RS00925at 221.288 kb on - strand, within RR42_RS00925at 221.348 kb on - strand, within RR42_RS00925at 221.348 kb on - strand, within RR42_RS00925at 221.348 kb on - strand, within RR42_RS00925at 221.851 kb on + strand, within RR42_RS00925at 221.851 kb on + strand, within RR42_RS00925at 222.000 kb on - strand, within RR42_RS00925at 222.043 kb on + strand, within RR42_RS00925at 222.043 kb on + strand, within RR42_RS00925at 222.043 kb on + strand, within RR42_RS00925at 222.043 kb on + strand, within RR42_RS00925at 222.044 kb on - strand, within RR42_RS00925at 222.133 kb on + strand, within RR42_RS00925at 222.133 kb on + strand, within RR42_RS00925at 222.134 kb on - strand, within RR42_RS00925at 222.134 kb on - strand, within RR42_RS00925at 222.134 kb on - strand, within RR42_RS00925at 222.134 kb on - strand, within RR42_RS00925at 222.134 kb on - strand, within RR42_RS00925at 222.134 kb on - strand, within RR42_RS00925at 222.149 kb on - strandat 222.149 kb on - strandat 222.149 kb on - strandat 222.272 kb on + strandat 222.273 kb on - strandat 222.273 kb on - strandat 222.353 kb on + strandat 222.354 kb on - strandat 222.614 kb on + strand, within RR42_RS00930at 222.629 kb on + strand, within RR42_RS00930at 222.629 kb on + strand, within RR42_RS00930at 222.629 kb on + strand, within RR42_RS00930at 222.631 kb on + strand, within RR42_RS00930at 222.631 kb on + strand, within RR42_RS00930at 222.632 kb on - strand, within RR42_RS00930at 222.632 kb on - strand, within RR42_RS00930at 222.632 kb on - strand, within RR42_RS00930at 222.661 kb on - strand, within RR42_RS00930at 222.998 kb on + strand, within RR42_RS00930at 222.998 kb on + strand, within RR42_RS00930at 222.998 kb on + strand, within RR42_RS00930at 222.998 kb on + strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 222.999 kb on - strand, within RR42_RS00930at 223.094 kb on + strand, within RR42_RS00930at 223.094 kb on + strand, within RR42_RS00930at 223.094 kb on + strand, within RR42_RS00930at 223.095 kb on - strand, within RR42_RS00930at 223.100 kb on + strand, within RR42_RS00930at 223.100 kb on + strand, within RR42_RS00930at 223.101 kb on - strand, within RR42_RS00930at 223.101 kb on - strand, within RR42_RS00930at 223.101 kb on - strand, within RR42_RS00930at 223.101 kb on - strand, within RR42_RS00930at 223.101 kb on - strand, within RR42_RS00930at 223.101 kb on - strand, within RR42_RS00930

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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219,950 - RR42_RS00920 0.36 +0.4
220,072 + RR42_RS00920 0.50 +2.3
220,072 + RR42_RS00920 0.50 -0.6
220,072 + RR42_RS00920 0.50 +0.6
220,072 + RR42_RS00920 0.50 -1.7
220,073 - RR42_RS00920 0.50 -0.8
220,073 - RR42_RS00920 0.50 +0.2
220,073 - RR42_RS00920 0.50 -2.0
220,073 - RR42_RS00920 0.50 -0.2
220,073 - RR42_RS00920 0.50 -0.3
220,090 + RR42_RS00920 0.52 -1.4
220,090 + RR42_RS00920 0.52 -0.2
220,091 - RR42_RS00920 0.52 -1.4
220,091 - RR42_RS00920 0.52 +0.2
220,091 - RR42_RS00920 0.52 +0.8
220,168 + RR42_RS00920 0.60 -1.1
220,169 - RR42_RS00920 0.60 -0.3
220,318 + RR42_RS00920 0.77 +0.2
220,318 + RR42_RS00920 0.77 -0.8
220,318 + RR42_RS00920 0.77 -0.2
220,319 - RR42_RS00920 0.77 -1.7
220,358 - RR42_RS00920 0.81 -0.6
220,358 - RR42_RS00920 0.81 -0.1
220,405 + RR42_RS00920 0.86 +0.4
220,431 + RR42_RS00920 0.89 -0.9
220,431 + RR42_RS00920 0.89 -0.1
220,431 + RR42_RS00920 0.89 -0.9
220,431 + RR42_RS00920 0.89 +0.5
220,432 - RR42_RS00920 0.89 -0.4
220,699 + +0.4
220,699 + -0.1
220,700 - -1.3
220,700 - -2.2
220,987 + RR42_RS00925 0.12 +0.1
220,988 - RR42_RS00925 0.13 -1.4
221,288 - RR42_RS00925 0.33 -1.0
221,348 - RR42_RS00925 0.37 -0.1
221,348 - RR42_RS00925 0.37 -2.4
221,348 - RR42_RS00925 0.37 -2.1
221,851 + RR42_RS00925 0.71 -1.6
221,851 + RR42_RS00925 0.71 -0.4
222,000 - RR42_RS00925 0.81 -1.7
222,043 + RR42_RS00925 0.83 +0.4
222,043 + RR42_RS00925 0.83 +0.0
222,043 + RR42_RS00925 0.83 -0.7
222,043 + RR42_RS00925 0.83 -0.3
222,044 - RR42_RS00925 0.84 -2.0
222,133 + RR42_RS00925 0.90 -0.3
222,133 + RR42_RS00925 0.90 +1.2
222,134 - RR42_RS00925 0.90 -2.0
222,134 - RR42_RS00925 0.90 -2.7
222,134 - RR42_RS00925 0.90 -0.1
222,134 - RR42_RS00925 0.90 -2.3
222,134 - RR42_RS00925 0.90 -1.0
222,134 - RR42_RS00925 0.90 -2.0
222,149 - +0.4
222,149 - -0.9
222,149 - -0.2
222,272 + +0.7
222,273 - -1.0
222,273 - -1.0
222,353 + -0.7
222,354 - +0.5
222,614 + RR42_RS00930 0.28 +0.8
222,629 + RR42_RS00930 0.29 +0.2
222,629 + RR42_RS00930 0.29 -0.2
222,629 + RR42_RS00930 0.29 +0.4
222,631 + RR42_RS00930 0.29 -0.0
222,631 + RR42_RS00930 0.29 -0.1
222,632 - RR42_RS00930 0.29 -1.0
222,632 - RR42_RS00930 0.29 -1.7
222,632 - RR42_RS00930 0.29 -2.0
222,661 - RR42_RS00930 0.31 -0.8
222,998 + RR42_RS00930 0.59 +0.1
222,998 + RR42_RS00930 0.59 -0.7
222,998 + RR42_RS00930 0.59 +0.0
222,998 + RR42_RS00930 0.59 -0.3
222,999 - RR42_RS00930 0.59 +0.3
222,999 - RR42_RS00930 0.59 -2.1
222,999 - RR42_RS00930 0.59 -0.8
222,999 - RR42_RS00930 0.59 -1.3
222,999 - RR42_RS00930 0.59 +0.2
222,999 - RR42_RS00930 0.59 -1.7
222,999 - RR42_RS00930 0.59 -0.7
222,999 - RR42_RS00930 0.59 -1.6
222,999 - RR42_RS00930 0.59 +1.3
222,999 - RR42_RS00930 0.59 -1.6
223,094 + RR42_RS00930 0.67 +0.4
223,094 + RR42_RS00930 0.67 -0.8
223,094 + RR42_RS00930 0.67 +0.1
223,095 - RR42_RS00930 0.67 -0.3
223,100 + RR42_RS00930 0.67 +0.1
223,100 + RR42_RS00930 0.67 -1.3
223,101 - RR42_RS00930 0.68 -0.9
223,101 - RR42_RS00930 0.68 -0.8
223,101 - RR42_RS00930 0.68 -2.0
223,101 - RR42_RS00930 0.68 -1.5
223,101 - RR42_RS00930 0.68 -0.8
223,101 - RR42_RS00930 0.68 -1.3

Or see this region's nucleotide sequence