Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00105 and RR42_RS00110 are separated by 237 nucleotides RR42_RS00110 and RR42_RS00115 are separated by 155 nucleotides RR42_RS00115 and RR42_RS00120 are separated by 4 nucleotides
RR42_RS00105: RR42_RS00105 - hypothetical protein, at 32,862 to 33,203
_RS00105
RR42_RS00110: RR42_RS00110 - hypothetical protein, at 33,441 to 33,656
_RS00110
RR42_RS00115: RR42_RS00115 - hypothetical protein, at 33,812 to 34,903
_RS00115
RR42_RS00120: RR42_RS00120 - hypothetical protein, at 34,908 to 35,831
_RS00120
Position (kb) 33
34
35 Strain fitness (log2 ratio) -2
-1
0
1 at 32.959 kb on + strand, within RR42_RS00105 at 32.960 kb on - strand, within RR42_RS00105 at 32.960 kb on - strand, within RR42_RS00105 at 32.960 kb on - strand, within RR42_RS00105 at 33.163 kb on + strand, within RR42_RS00105 at 33.163 kb on + strand, within RR42_RS00105 at 33.163 kb on + strand, within RR42_RS00105 at 33.163 kb on + strand, within RR42_RS00105 at 33.164 kb on - strand, within RR42_RS00105 at 33.230 kb on + strand at 33.231 kb on - strand at 33.231 kb on - strand at 33.231 kb on - strand at 33.298 kb on + strand at 33.299 kb on - strand at 33.354 kb on - strand at 33.773 kb on + strand at 33.778 kb on + strand at 34.009 kb on - strand, within RR42_RS00115 at 34.056 kb on - strand, within RR42_RS00115 at 34.692 kb on - strand, within RR42_RS00115 at 34.942 kb on - strand at 34.942 kb on - strand at 35.104 kb on + strand, within RR42_RS00120 at 35.104 kb on + strand, within RR42_RS00120 at 35.104 kb on + strand, within RR42_RS00120 at 35.148 kb on + strand, within RR42_RS00120 at 35.149 kb on - strand, within RR42_RS00120 at 35.149 kb on - strand, within RR42_RS00120 at 35.194 kb on - strand, within RR42_RS00120 at 35.194 kb on - strand, within RR42_RS00120 at 35.194 kb on - strand, within RR42_RS00120 at 35.219 kb on + strand, within RR42_RS00120 at 35.256 kb on + strand, within RR42_RS00120 at 35.256 kb on + strand, within RR42_RS00120 at 35.257 kb on - strand, within RR42_RS00120 at 35.257 kb on - strand, within RR42_RS00120 at 35.282 kb on + strand, within RR42_RS00120 at 35.282 kb on + strand, within RR42_RS00120 at 35.316 kb on - strand, within RR42_RS00120 at 35.316 kb on - strand, within RR42_RS00120 at 35.316 kb on - strand, within RR42_RS00120 at 35.358 kb on - strand, within RR42_RS00120 at 35.712 kb on + strand, within RR42_RS00120 at 35.712 kb on + strand, within RR42_RS00120 at 35.713 kb on - strand, within RR42_RS00120 at 35.765 kb on - strand at 35.795 kb on + strand at 35.795 kb on + strand at 35.892 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 32,959 + RR42_RS00105 0.28 -0.2 32,960 - RR42_RS00105 0.29 +1.1 32,960 - RR42_RS00105 0.29 +0.5 32,960 - RR42_RS00105 0.29 -0.6 33,163 + RR42_RS00105 0.88 -0.8 33,163 + RR42_RS00105 0.88 +0.1 33,163 + RR42_RS00105 0.88 -0.2 33,163 + RR42_RS00105 0.88 +0.1 33,164 - RR42_RS00105 0.88 -0.7 33,230 + -0.8 33,231 - +0.0 33,231 - -0.0 33,231 - -0.4 33,298 + -0.4 33,299 - -1.1 33,354 - +0.4 33,773 + +0.2 33,778 + -0.8 34,009 - RR42_RS00115 0.18 -1.0 34,056 - RR42_RS00115 0.22 -1.2 34,692 - RR42_RS00115 0.81 -0.9 34,942 - +0.4 34,942 - +0.2 35,104 + RR42_RS00120 0.21 -1.1 35,104 + RR42_RS00120 0.21 -0.4 35,104 + RR42_RS00120 0.21 +0.9 35,148 + RR42_RS00120 0.26 +0.5 35,149 - RR42_RS00120 0.26 +0.3 35,149 - RR42_RS00120 0.26 -0.5 35,194 - RR42_RS00120 0.31 -0.5 35,194 - RR42_RS00120 0.31 -0.9 35,194 - RR42_RS00120 0.31 +0.0 35,219 + RR42_RS00120 0.34 -0.4 35,256 + RR42_RS00120 0.38 +0.5 35,256 + RR42_RS00120 0.38 +0.3 35,257 - RR42_RS00120 0.38 -0.1 35,257 - RR42_RS00120 0.38 -0.1 35,282 + RR42_RS00120 0.40 -0.4 35,282 + RR42_RS00120 0.40 -0.9 35,316 - RR42_RS00120 0.44 -0.4 35,316 - RR42_RS00120 0.44 -0.2 35,316 - RR42_RS00120 0.44 -0.7 35,358 - RR42_RS00120 0.49 -0.3 35,712 + RR42_RS00120 0.87 -0.6 35,712 + RR42_RS00120 0.87 -2.1 35,713 - RR42_RS00120 0.87 -2.2 35,765 - +0.0 35,795 + -1.3 35,795 + -0.6 35,892 + -0.3
Or see this region's nucleotide sequence