Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00115

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00105 and RR42_RS00110 are separated by 237 nucleotidesRR42_RS00110 and RR42_RS00115 are separated by 155 nucleotidesRR42_RS00115 and RR42_RS00120 are separated by 4 nucleotides RR42_RS00105: RR42_RS00105 - hypothetical protein, at 32,862 to 33,203 _RS00105 RR42_RS00110: RR42_RS00110 - hypothetical protein, at 33,441 to 33,656 _RS00110 RR42_RS00115: RR42_RS00115 - hypothetical protein, at 33,812 to 34,903 _RS00115 RR42_RS00120: RR42_RS00120 - hypothetical protein, at 34,908 to 35,831 _RS00120 Position (kb) 33 34 35Strain fitness (log2 ratio) -2 -1 0 1at 32.959 kb on + strand, within RR42_RS00105at 32.960 kb on - strand, within RR42_RS00105at 32.960 kb on - strand, within RR42_RS00105at 32.960 kb on - strand, within RR42_RS00105at 33.163 kb on + strand, within RR42_RS00105at 33.163 kb on + strand, within RR42_RS00105at 33.163 kb on + strand, within RR42_RS00105at 33.163 kb on + strand, within RR42_RS00105at 33.164 kb on - strand, within RR42_RS00105at 33.230 kb on + strandat 33.231 kb on - strandat 33.231 kb on - strandat 33.231 kb on - strandat 33.298 kb on + strandat 33.299 kb on - strandat 33.354 kb on - strandat 33.773 kb on + strandat 33.778 kb on + strandat 34.009 kb on - strand, within RR42_RS00115at 34.056 kb on - strand, within RR42_RS00115at 34.692 kb on - strand, within RR42_RS00115at 34.942 kb on - strandat 34.942 kb on - strandat 35.104 kb on + strand, within RR42_RS00120at 35.104 kb on + strand, within RR42_RS00120at 35.104 kb on + strand, within RR42_RS00120at 35.148 kb on + strand, within RR42_RS00120at 35.149 kb on - strand, within RR42_RS00120at 35.149 kb on - strand, within RR42_RS00120at 35.194 kb on - strand, within RR42_RS00120at 35.194 kb on - strand, within RR42_RS00120at 35.194 kb on - strand, within RR42_RS00120at 35.219 kb on + strand, within RR42_RS00120at 35.256 kb on + strand, within RR42_RS00120at 35.256 kb on + strand, within RR42_RS00120at 35.257 kb on - strand, within RR42_RS00120at 35.257 kb on - strand, within RR42_RS00120at 35.282 kb on + strand, within RR42_RS00120at 35.282 kb on + strand, within RR42_RS00120at 35.316 kb on - strand, within RR42_RS00120at 35.316 kb on - strand, within RR42_RS00120at 35.316 kb on - strand, within RR42_RS00120at 35.358 kb on - strand, within RR42_RS00120at 35.712 kb on + strand, within RR42_RS00120at 35.712 kb on + strand, within RR42_RS00120at 35.713 kb on - strand, within RR42_RS00120at 35.765 kb on - strandat 35.795 kb on + strandat 35.795 kb on + strandat 35.892 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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32,959 + RR42_RS00105 0.28 -0.2
32,960 - RR42_RS00105 0.29 +1.1
32,960 - RR42_RS00105 0.29 +0.5
32,960 - RR42_RS00105 0.29 -0.6
33,163 + RR42_RS00105 0.88 -0.8
33,163 + RR42_RS00105 0.88 +0.1
33,163 + RR42_RS00105 0.88 -0.2
33,163 + RR42_RS00105 0.88 +0.1
33,164 - RR42_RS00105 0.88 -0.7
33,230 + -0.8
33,231 - +0.0
33,231 - -0.0
33,231 - -0.4
33,298 + -0.4
33,299 - -1.1
33,354 - +0.4
33,773 + +0.2
33,778 + -0.8
34,009 - RR42_RS00115 0.18 -1.0
34,056 - RR42_RS00115 0.22 -1.2
34,692 - RR42_RS00115 0.81 -0.9
34,942 - +0.4
34,942 - +0.2
35,104 + RR42_RS00120 0.21 -1.1
35,104 + RR42_RS00120 0.21 -0.4
35,104 + RR42_RS00120 0.21 +0.9
35,148 + RR42_RS00120 0.26 +0.5
35,149 - RR42_RS00120 0.26 +0.3
35,149 - RR42_RS00120 0.26 -0.5
35,194 - RR42_RS00120 0.31 -0.5
35,194 - RR42_RS00120 0.31 -0.9
35,194 - RR42_RS00120 0.31 +0.0
35,219 + RR42_RS00120 0.34 -0.4
35,256 + RR42_RS00120 0.38 +0.5
35,256 + RR42_RS00120 0.38 +0.3
35,257 - RR42_RS00120 0.38 -0.1
35,257 - RR42_RS00120 0.38 -0.1
35,282 + RR42_RS00120 0.40 -0.4
35,282 + RR42_RS00120 0.40 -0.9
35,316 - RR42_RS00120 0.44 -0.4
35,316 - RR42_RS00120 0.44 -0.2
35,316 - RR42_RS00120 0.44 -0.7
35,358 - RR42_RS00120 0.49 -0.3
35,712 + RR42_RS00120 0.87 -0.6
35,712 + RR42_RS00120 0.87 -2.1
35,713 - RR42_RS00120 0.87 -2.2
35,765 - +0.0
35,795 + -1.3
35,795 + -0.6
35,892 + -0.3

Or see this region's nucleotide sequence