Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4210

Experiment: Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4209 and Ga0059261_4210 overlap by 4 nucleotidesGa0059261_4210 and Ga0059261_4211 are separated by 117 nucleotides Ga0059261_4209: Ga0059261_4209 - Transglycosylase SLT domain, at 4,362,058 to 4,363,845 _4209 Ga0059261_4210: Ga0059261_4210 - Uracil-DNA glycosylase, at 4,363,842 to 4,364,579 _4210 Ga0059261_4211: Ga0059261_4211 - Dehydrogenases (flavoproteins), at 4,364,697 to 4,366,358 _4211 Position (kb) 4363 4364 4365Strain fitness (log2 ratio) -2 -1 0 1 2at 4362.935 kb on + strand, within Ga0059261_4209at 4362.935 kb on + strand, within Ga0059261_4209at 4362.935 kb on + strand, within Ga0059261_4209at 4362.935 kb on + strand, within Ga0059261_4209at 4362.935 kb on + strand, within Ga0059261_4209at 4362.936 kb on - strand, within Ga0059261_4209at 4362.936 kb on - strand, within Ga0059261_4209at 4363.026 kb on - strand, within Ga0059261_4209at 4363.038 kb on + strand, within Ga0059261_4209at 4363.218 kb on + strand, within Ga0059261_4209at 4363.218 kb on + strand, within Ga0059261_4209at 4363.218 kb on + strand, within Ga0059261_4209at 4363.218 kb on + strand, within Ga0059261_4209at 4363.219 kb on - strand, within Ga0059261_4209at 4363.219 kb on - strand, within Ga0059261_4209at 4363.220 kb on + strand, within Ga0059261_4209at 4363.220 kb on + strand, within Ga0059261_4209at 4363.220 kb on + strand, within Ga0059261_4209at 4363.220 kb on + strandat 4363.220 kb on + strand, within Ga0059261_4209at 4363.220 kb on + strand, within Ga0059261_4209at 4363.221 kb on - strand, within Ga0059261_4209at 4363.221 kb on - strand, within Ga0059261_4209at 4363.221 kb on - strand, within Ga0059261_4209at 4363.221 kb on - strand, within Ga0059261_4209at 4363.223 kb on + strand, within Ga0059261_4209at 4363.223 kb on + strand, within Ga0059261_4209at 4363.223 kb on + strand, within Ga0059261_4209at 4363.223 kb on + strand, within Ga0059261_4209at 4363.223 kb on + strand, within Ga0059261_4209at 4363.223 kb on + strand, within Ga0059261_4209at 4363.223 kb on + strand, within Ga0059261_4209at 4363.223 kb on + strand, within Ga0059261_4209at 4363.223 kb on + strandat 4363.223 kb on + strand, within Ga0059261_4209at 4363.223 kb on + strand, within Ga0059261_4209at 4363.224 kb on - strand, within Ga0059261_4209at 4363.224 kb on - strand, within Ga0059261_4209at 4363.224 kb on - strand, within Ga0059261_4209at 4363.224 kb on - strand, within Ga0059261_4209at 4363.224 kb on - strand, within Ga0059261_4209at 4363.224 kb on - strand, within Ga0059261_4209at 4363.224 kb on - strand, within Ga0059261_4209at 4363.224 kb on - strand, within Ga0059261_4209at 4363.224 kb on - strand, within Ga0059261_4209at 4363.224 kb on - strand, within Ga0059261_4209at 4363.224 kb on - strand, within Ga0059261_4209at 4363.391 kb on + strand, within Ga0059261_4209at 4363.392 kb on - strand, within Ga0059261_4209at 4363.392 kb on - strand, within Ga0059261_4209at 4363.398 kb on + strand, within Ga0059261_4209at 4363.398 kb on + strand, within Ga0059261_4209at 4363.399 kb on - strand, within Ga0059261_4209at 4363.399 kb on - strand, within Ga0059261_4209at 4363.399 kb on - strand, within Ga0059261_4209at 4363.577 kb on + strand, within Ga0059261_4209at 4363.577 kb on + strand, within Ga0059261_4209at 4363.577 kb on + strand, within Ga0059261_4209at 4363.577 kb on + strand, within Ga0059261_4209at 4363.577 kb on + strand, within Ga0059261_4209at 4363.577 kb on + strand, within Ga0059261_4209at 4363.578 kb on - strand, within Ga0059261_4209at 4363.578 kb on - strand, within Ga0059261_4209at 4363.603 kb on + strand, within Ga0059261_4209at 4363.603 kb on + strand, within Ga0059261_4209at 4363.603 kb on + strand, within Ga0059261_4209at 4363.604 kb on - strand, within Ga0059261_4209at 4363.604 kb on - strand, within Ga0059261_4209at 4363.834 kb on - strandat 4363.834 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0005 mg/ml
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4,362,935 + Ga0059261_4209 0.49 -0.1
4,362,935 + Ga0059261_4209 0.49 -0.0
4,362,935 + Ga0059261_4209 0.49 -0.7
4,362,935 + Ga0059261_4209 0.49 -0.4
4,362,935 + Ga0059261_4209 0.49 -0.0
4,362,936 - Ga0059261_4209 0.49 -0.3
4,362,936 - Ga0059261_4209 0.49 -0.5
4,363,026 - Ga0059261_4209 0.54 -0.6
4,363,038 + Ga0059261_4209 0.55 -0.4
4,363,218 + Ga0059261_4209 0.65 -0.2
4,363,218 + Ga0059261_4209 0.65 +0.3
4,363,218 + Ga0059261_4209 0.65 -1.1
4,363,218 + Ga0059261_4209 0.65 +0.1
4,363,219 - Ga0059261_4209 0.65 +0.8
4,363,219 - Ga0059261_4209 0.65 -0.4
4,363,220 + Ga0059261_4209 0.65 +0.0
4,363,220 + Ga0059261_4209 0.65 +0.8
4,363,220 + Ga0059261_4209 0.65 -0.4
4,363,220 + -0.6
4,363,220 + Ga0059261_4209 0.65 +0.4
4,363,220 + Ga0059261_4209 0.65 -0.4
4,363,221 - Ga0059261_4209 0.65 -0.6
4,363,221 - Ga0059261_4209 0.65 +0.0
4,363,221 - Ga0059261_4209 0.65 +2.2
4,363,221 - Ga0059261_4209 0.65 -1.1
4,363,223 + Ga0059261_4209 0.65 -0.1
4,363,223 + Ga0059261_4209 0.65 -0.6
4,363,223 + Ga0059261_4209 0.65 -0.5
4,363,223 + Ga0059261_4209 0.65 -1.0
4,363,223 + Ga0059261_4209 0.65 -0.3
4,363,223 + Ga0059261_4209 0.65 -1.2
4,363,223 + Ga0059261_4209 0.65 -1.1
4,363,223 + Ga0059261_4209 0.65 -0.1
4,363,223 + -1.1
4,363,223 + Ga0059261_4209 0.65 +0.0
4,363,223 + Ga0059261_4209 0.65 -1.6
4,363,224 - Ga0059261_4209 0.65 -1.1
4,363,224 - Ga0059261_4209 0.65 +0.8
4,363,224 - Ga0059261_4209 0.65 -0.2
4,363,224 - Ga0059261_4209 0.65 +0.5
4,363,224 - Ga0059261_4209 0.65 -0.4
4,363,224 - Ga0059261_4209 0.65 -0.4
4,363,224 - Ga0059261_4209 0.65 -0.3
4,363,224 - Ga0059261_4209 0.65 +0.0
4,363,224 - Ga0059261_4209 0.65 +0.7
4,363,224 - Ga0059261_4209 0.65 -1.1
4,363,224 - Ga0059261_4209 0.65 -2.3
4,363,391 + Ga0059261_4209 0.75 -1.8
4,363,392 - Ga0059261_4209 0.75 -0.6
4,363,392 - Ga0059261_4209 0.75 +0.3
4,363,398 + Ga0059261_4209 0.75 +0.7
4,363,398 + Ga0059261_4209 0.75 -2.0
4,363,399 - Ga0059261_4209 0.75 -0.4
4,363,399 - Ga0059261_4209 0.75 -1.3
4,363,399 - Ga0059261_4209 0.75 +0.4
4,363,577 + Ga0059261_4209 0.85 -1.1
4,363,577 + Ga0059261_4209 0.85 -0.8
4,363,577 + Ga0059261_4209 0.85 -1.4
4,363,577 + Ga0059261_4209 0.85 -0.5
4,363,577 + Ga0059261_4209 0.85 -0.7
4,363,577 + Ga0059261_4209 0.85 -0.8
4,363,578 - Ga0059261_4209 0.85 -0.4
4,363,578 - Ga0059261_4209 0.85 -0.1
4,363,603 + Ga0059261_4209 0.86 -0.0
4,363,603 + Ga0059261_4209 0.86 +0.1
4,363,603 + Ga0059261_4209 0.86 -0.7
4,363,604 - Ga0059261_4209 0.86 -0.7
4,363,604 - Ga0059261_4209 0.86 +0.2
4,363,834 - +1.2
4,363,834 - -0.4

Or see this region's nucleotide sequence