Experiment: Chloramphenicol 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3603 and Ga0059261_3604 overlap by 4 nucleotides Ga0059261_3604 and Ga0059261_3605 are separated by 65 nucleotides Ga0059261_3605 and Ga0059261_3606 are separated by 235 nucleotides Ga0059261_3606 and Ga0059261_3607 are separated by 121 nucleotides
Ga0059261_3603: Ga0059261_3603 - Predicted amidohydrolase, at 3,723,240 to 3,724,067
_3603
Ga0059261_3604: Ga0059261_3604 - Uncharacterized protein conserved in bacteria, at 3,724,064 to 3,724,501
_3604
Ga0059261_3605: Ga0059261_3605 - tRNA, at 3,724,567 to 3,724,643
_3605
Ga0059261_3606: Ga0059261_3606 - Transcription elongation factor, at 3,724,879 to 3,725,292
_3606
Ga0059261_3607: Ga0059261_3607 - TonB-dependent siderophore receptor, at 3,725,414 to 3,727,756
_3607
Position (kb)
3724
3725 Strain fitness (log2 ratio)
-2
-1
0
1 at 3723.571 kb on - strand, within Ga0059261_3603 at 3723.636 kb on + strand at 3723.636 kb on + strand, within Ga0059261_3603 at 3723.636 kb on + strand, within Ga0059261_3603 at 3723.636 kb on + strand, within Ga0059261_3603 at 3723.636 kb on + strand, within Ga0059261_3603 at 3723.637 kb on - strand, within Ga0059261_3603 at 3723.637 kb on - strand, within Ga0059261_3603 at 3723.637 kb on - strand, within Ga0059261_3603 at 3723.637 kb on - strand, within Ga0059261_3603 at 3723.637 kb on - strand, within Ga0059261_3603 at 3723.702 kb on + strand, within Ga0059261_3603 at 3723.702 kb on + strand, within Ga0059261_3603 at 3723.702 kb on + strand, within Ga0059261_3603 at 3723.702 kb on + strand, within Ga0059261_3603 at 3723.702 kb on + strand, within Ga0059261_3603 at 3723.702 kb on + strand, within Ga0059261_3603 at 3723.703 kb on - strand, within Ga0059261_3603 at 3723.703 kb on - strand, within Ga0059261_3603 at 3723.897 kb on + strand, within Ga0059261_3603 at 3723.897 kb on + strand, within Ga0059261_3603 at 3723.897 kb on + strand, within Ga0059261_3603 at 3723.898 kb on - strand, within Ga0059261_3603 at 3723.898 kb on - strand, within Ga0059261_3603 at 3723.898 kb on - strand, within Ga0059261_3603 at 3724.133 kb on + strand, within Ga0059261_3604 at 3724.247 kb on - strand, within Ga0059261_3604 at 3724.517 kb on + strand at 3724.517 kb on + strand at 3724.517 kb on + strand at 3724.518 kb on - strand at 3724.551 kb on + strand at 3724.551 kb on + strand at 3724.575 kb on - strand, within Ga0059261_3605 at 3724.588 kb on - strand, within Ga0059261_3605 at 3724.588 kb on - strand at 3724.604 kb on - strand, within Ga0059261_3605 at 3724.769 kb on + strand at 3724.769 kb on + strand at 3724.857 kb on + strand at 3724.857 kb on + strand at 3724.857 kb on + strand at 3724.858 kb on - strand at 3724.858 kb on - strand at 3724.858 kb on - strand at 3724.858 kb on - strand at 3724.858 kb on - strand at 3724.858 kb on - strand at 3724.876 kb on - strand at 3724.920 kb on + strand at 3724.920 kb on + strand at 3724.921 kb on - strand, within Ga0059261_3606 at 3724.921 kb on - strand, within Ga0059261_3606 at 3724.921 kb on - strand, within Ga0059261_3606 at 3724.921 kb on - strand, within Ga0059261_3606 at 3725.084 kb on - strand, within Ga0059261_3606 at 3725.145 kb on + strand, within Ga0059261_3606 at 3725.285 kb on + strand at 3725.285 kb on + strand at 3725.285 kb on + strand at 3725.285 kb on + strand at 3725.285 kb on + strand at 3725.285 kb on + strand at 3725.370 kb on + strand at 3725.370 kb on + strand at 3725.371 kb on - strand at 3725.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0005 mg/ml remove 3,723,571 - Ga0059261_3603 0.40 +1.6 3,723,636 + +0.4 3,723,636 + Ga0059261_3603 0.48 -0.3 3,723,636 + Ga0059261_3603 0.48 +0.5 3,723,636 + Ga0059261_3603 0.48 +0.5 3,723,636 + Ga0059261_3603 0.48 -0.4 3,723,637 - Ga0059261_3603 0.48 +1.0 3,723,637 - Ga0059261_3603 0.48 +0.5 3,723,637 - Ga0059261_3603 0.48 +0.1 3,723,637 - Ga0059261_3603 0.48 -1.5 3,723,637 - Ga0059261_3603 0.48 -0.6 3,723,702 + Ga0059261_3603 0.56 -0.3 3,723,702 + Ga0059261_3603 0.56 -0.9 3,723,702 + Ga0059261_3603 0.56 +0.5 3,723,702 + Ga0059261_3603 0.56 +0.9 3,723,702 + Ga0059261_3603 0.56 -0.3 3,723,702 + Ga0059261_3603 0.56 +0.9 3,723,703 - Ga0059261_3603 0.56 +0.4 3,723,703 - Ga0059261_3603 0.56 -0.1 3,723,897 + Ga0059261_3603 0.79 +0.5 3,723,897 + Ga0059261_3603 0.79 +0.4 3,723,897 + Ga0059261_3603 0.79 +0.4 3,723,898 - Ga0059261_3603 0.79 -0.7 3,723,898 - Ga0059261_3603 0.79 +0.3 3,723,898 - Ga0059261_3603 0.79 -0.3 3,724,133 + Ga0059261_3604 0.16 +0.9 3,724,247 - Ga0059261_3604 0.42 +0.5 3,724,517 + -0.5 3,724,517 + +0.0 3,724,517 + +0.1 3,724,518 - -1.5 3,724,551 + -1.8 3,724,551 + -0.6 3,724,575 - Ga0059261_3605 0.10 +0.1 3,724,588 - Ga0059261_3605 0.27 +0.7 3,724,588 - +1.1 3,724,604 - Ga0059261_3605 0.48 -0.1 3,724,769 + +0.2 3,724,769 + +0.3 3,724,857 + +0.5 3,724,857 + +0.7 3,724,857 + -0.0 3,724,858 - -0.9 3,724,858 - +0.1 3,724,858 - +0.5 3,724,858 - -0.4 3,724,858 - +0.3 3,724,858 - -0.5 3,724,876 - +0.9 3,724,920 + +0.0 3,724,920 + -0.3 3,724,921 - Ga0059261_3606 0.10 -0.1 3,724,921 - Ga0059261_3606 0.10 -0.2 3,724,921 - Ga0059261_3606 0.10 +0.2 3,724,921 - Ga0059261_3606 0.10 -0.4 3,725,084 - Ga0059261_3606 0.50 -1.3 3,725,145 + Ga0059261_3606 0.64 -0.2 3,725,285 + -0.3 3,725,285 + +0.5 3,725,285 + -0.5 3,725,285 + +0.1 3,725,285 + -1.5 3,725,285 + +0.3 3,725,370 + +0.3 3,725,370 + -0.0 3,725,371 - -0.5 3,725,371 - -0.6
Or see this region's nucleotide sequence