Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3243

Experiment: Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3241 and Ga0059261_3242 overlap by 4 nucleotidesGa0059261_3242 and Ga0059261_3243 are separated by 21 nucleotidesGa0059261_3243 and Ga0059261_3244 are separated by 1 nucleotides Ga0059261_3241: Ga0059261_3241 - AAA domain, at 3,374,861 to 3,376,150 _3241 Ga0059261_3242: Ga0059261_3242 - Type IV pili component, at 3,376,147 to 3,376,782 _3242 Ga0059261_3243: Ga0059261_3243 - Flp pilus assembly protein, secretin CpaC, at 3,376,804 to 3,378,435 _3243 Ga0059261_3244: Ga0059261_3244 - Flp pilus assembly protein CpaB, at 3,378,437 to 3,379,465 _3244 Position (kb) 3376 3377 3378 3379Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3375.810 kb on + strand, within Ga0059261_3241at 3375.810 kb on + strand, within Ga0059261_3241at 3375.810 kb on + strand, within Ga0059261_3241at 3375.810 kb on + strand, within Ga0059261_3241at 3375.810 kb on + strand, within Ga0059261_3241at 3375.810 kb on + strand, within Ga0059261_3241at 3375.810 kb on + strand, within Ga0059261_3241at 3375.810 kb on + strand, within Ga0059261_3241at 3375.811 kb on - strand, within Ga0059261_3241at 3375.811 kb on - strand, within Ga0059261_3241at 3375.811 kb on - strand, within Ga0059261_3241at 3375.811 kb on - strand, within Ga0059261_3241at 3375.844 kb on - strand, within Ga0059261_3241at 3375.844 kb on - strand, within Ga0059261_3241at 3376.217 kb on + strand, within Ga0059261_3242at 3376.217 kb on + strand, within Ga0059261_3242at 3376.361 kb on + strand, within Ga0059261_3242at 3376.361 kb on + strand, within Ga0059261_3242at 3376.361 kb on + strand, within Ga0059261_3242at 3376.362 kb on - strand, within Ga0059261_3242at 3376.362 kb on - strand, within Ga0059261_3242at 3376.373 kb on + strand, within Ga0059261_3242at 3376.373 kb on + strand, within Ga0059261_3242at 3376.373 kb on + strand, within Ga0059261_3242at 3376.374 kb on - strand, within Ga0059261_3242at 3376.374 kb on - strand, within Ga0059261_3242at 3376.374 kb on - strand, within Ga0059261_3242at 3376.374 kb on - strand, within Ga0059261_3242at 3376.497 kb on - strand, within Ga0059261_3242at 3376.575 kb on - strand, within Ga0059261_3242at 3376.664 kb on + strandat 3376.664 kb on + strand, within Ga0059261_3242at 3376.665 kb on - strand, within Ga0059261_3242at 3376.665 kb on - strand, within Ga0059261_3242at 3376.665 kb on - strand, within Ga0059261_3242at 3376.713 kb on + strand, within Ga0059261_3242at 3376.713 kb on + strand, within Ga0059261_3242at 3376.714 kb on - strand, within Ga0059261_3242at 3376.715 kb on + strand, within Ga0059261_3242at 3376.715 kb on + strand, within Ga0059261_3242at 3376.715 kb on + strand, within Ga0059261_3242at 3376.715 kb on + strand, within Ga0059261_3242at 3376.715 kb on + strand, within Ga0059261_3242at 3376.715 kb on + strand, within Ga0059261_3242at 3376.715 kb on + strand, within Ga0059261_3242at 3376.715 kb on + strand, within Ga0059261_3242at 3376.715 kb on + strand, within Ga0059261_3242at 3376.715 kb on + strand, within Ga0059261_3242at 3376.715 kb on - strand, within Ga0059261_3242at 3376.716 kb on - strand, within Ga0059261_3242at 3376.716 kb on - strand, within Ga0059261_3242at 3376.716 kb on - strand, within Ga0059261_3242at 3376.716 kb on - strandat 3376.716 kb on - strand, within Ga0059261_3242at 3376.716 kb on - strand, within Ga0059261_3242at 3376.716 kb on - strand, within Ga0059261_3242at 3376.716 kb on - strand, within Ga0059261_3242at 3376.716 kb on - strand, within Ga0059261_3242at 3376.716 kb on - strand, within Ga0059261_3242at 3376.716 kb on - strand, within Ga0059261_3242at 3376.716 kb on - strand, within Ga0059261_3242at 3376.716 kb on - strand, within Ga0059261_3242at 3376.716 kb on - strand, within Ga0059261_3242at 3376.716 kb on - strand, within Ga0059261_3242at 3376.716 kb on - strand, within Ga0059261_3242at 3376.770 kb on + strandat 3376.770 kb on + strandat 3376.770 kb on + strandat 3376.771 kb on - strandat 3376.771 kb on - strandat 3376.786 kb on + strandat 3376.786 kb on + strandat 3376.786 kb on + strandat 3376.786 kb on + strandat 3376.786 kb on + strandat 3376.786 kb on + strandat 3376.786 kb on + strandat 3376.786 kb on + strandat 3376.787 kb on - strandat 3376.787 kb on - strandat 3376.787 kb on - strandat 3376.787 kb on - strandat 3376.787 kb on - strandat 3376.787 kb on - strandat 3376.787 kb on - strandat 3377.048 kb on + strand, within Ga0059261_3243at 3377.049 kb on - strand, within Ga0059261_3243at 3377.099 kb on + strand, within Ga0059261_3243at 3377.099 kb on + strand, within Ga0059261_3243at 3377.100 kb on - strand, within Ga0059261_3243at 3377.100 kb on - strand, within Ga0059261_3243at 3377.426 kb on + strand, within Ga0059261_3243at 3377.426 kb on + strand, within Ga0059261_3243at 3377.426 kb on + strand, within Ga0059261_3243at 3377.426 kb on + strand, within Ga0059261_3243at 3377.427 kb on - strand, within Ga0059261_3243at 3377.427 kb on - strand, within Ga0059261_3243at 3377.427 kb on - strand, within Ga0059261_3243at 3377.705 kb on + strand, within Ga0059261_3243at 3377.705 kb on + strand, within Ga0059261_3243at 3377.706 kb on - strand, within Ga0059261_3243at 3377.706 kb on - strand, within Ga0059261_3243at 3377.706 kb on - strand, within Ga0059261_3243at 3377.706 kb on - strand, within Ga0059261_3243at 3377.760 kb on + strand, within Ga0059261_3243at 3378.018 kb on + strand, within Ga0059261_3243at 3378.137 kb on + strand, within Ga0059261_3243at 3378.137 kb on + strand, within Ga0059261_3243at 3378.137 kb on + strand, within Ga0059261_3243at 3378.137 kb on + strand, within Ga0059261_3243at 3378.137 kb on + strand, within Ga0059261_3243at 3378.137 kb on + strand, within Ga0059261_3243at 3378.138 kb on - strand, within Ga0059261_3243at 3378.138 kb on - strand, within Ga0059261_3243at 3378.167 kb on + strand, within Ga0059261_3243at 3378.466 kb on + strandat 3378.472 kb on - strandat 3378.529 kb on - strandat 3378.745 kb on + strand, within Ga0059261_3244at 3378.745 kb on + strand, within Ga0059261_3244at 3378.745 kb on + strand, within Ga0059261_3244at 3378.746 kb on - strand, within Ga0059261_3244at 3378.746 kb on - strand, within Ga0059261_3244at 3378.746 kb on - strand, within Ga0059261_3244at 3378.849 kb on + strand, within Ga0059261_3244at 3378.849 kb on + strand, within Ga0059261_3244at 3378.849 kb on + strand, within Ga0059261_3244at 3378.849 kb on + strand, within Ga0059261_3244at 3378.849 kb on + strand, within Ga0059261_3244at 3378.849 kb on + strand, within Ga0059261_3244at 3378.849 kb on + strand, within Ga0059261_3244at 3378.849 kb on + strand, within Ga0059261_3244at 3378.850 kb on - strand, within Ga0059261_3244at 3378.850 kb on - strand, within Ga0059261_3244at 3378.850 kb on - strand, within Ga0059261_3244at 3378.850 kb on - strand, within Ga0059261_3244at 3378.850 kb on - strand, within Ga0059261_3244at 3378.850 kb on - strand, within Ga0059261_3244at 3378.850 kb on - strand, within Ga0059261_3244at 3379.212 kb on + strand, within Ga0059261_3244at 3379.213 kb on - strand, within Ga0059261_3244at 3379.213 kb on - strand, within Ga0059261_3244at 3379.213 kb on - strand, within Ga0059261_3244at 3379.215 kb on + strand, within Ga0059261_3244at 3379.215 kb on + strand, within Ga0059261_3244at 3379.215 kb on + strand, within Ga0059261_3244at 3379.215 kb on + strand, within Ga0059261_3244at 3379.215 kb on + strand, within Ga0059261_3244at 3379.215 kb on + strand, within Ga0059261_3244at 3379.216 kb on - strand, within Ga0059261_3244at 3379.216 kb on - strand, within Ga0059261_3244at 3379.216 kb on - strand, within Ga0059261_3244at 3379.216 kb on - strand, within Ga0059261_3244at 3379.216 kb on - strand, within Ga0059261_3244at 3379.216 kb on - strand, within Ga0059261_3244at 3379.216 kb on - strand, within Ga0059261_3244at 3379.424 kb on - strandat 3379.424 kb on - strandat 3379.424 kb on - strandat 3379.424 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0005 mg/ml
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3,375,810 + Ga0059261_3241 0.74 -0.0
3,375,810 + Ga0059261_3241 0.74 +0.7
3,375,810 + Ga0059261_3241 0.74 -0.4
3,375,810 + Ga0059261_3241 0.74 +0.7
3,375,810 + Ga0059261_3241 0.74 +0.1
3,375,810 + Ga0059261_3241 0.74 +0.6
3,375,810 + Ga0059261_3241 0.74 +0.0
3,375,810 + Ga0059261_3241 0.74 -0.3
3,375,811 - Ga0059261_3241 0.74 +0.1
3,375,811 - Ga0059261_3241 0.74 +0.2
3,375,811 - Ga0059261_3241 0.74 -0.6
3,375,811 - Ga0059261_3241 0.74 -0.4
3,375,844 - Ga0059261_3241 0.76 +1.0
3,375,844 - Ga0059261_3241 0.76 +0.3
3,376,217 + Ga0059261_3242 0.11 +0.2
3,376,217 + Ga0059261_3242 0.11 +0.8
3,376,361 + Ga0059261_3242 0.34 -0.4
3,376,361 + Ga0059261_3242 0.34 -0.7
3,376,361 + Ga0059261_3242 0.34 +1.0
3,376,362 - Ga0059261_3242 0.34 -0.3
3,376,362 - Ga0059261_3242 0.34 -0.2
3,376,373 + Ga0059261_3242 0.36 +1.0
3,376,373 + Ga0059261_3242 0.36 +0.9
3,376,373 + Ga0059261_3242 0.36 -0.3
3,376,374 - Ga0059261_3242 0.36 +0.3
3,376,374 - Ga0059261_3242 0.36 +0.4
3,376,374 - Ga0059261_3242 0.36 +0.3
3,376,374 - Ga0059261_3242 0.36 -0.8
3,376,497 - Ga0059261_3242 0.55 -0.8
3,376,575 - Ga0059261_3242 0.67 -0.1
3,376,664 + -1.4
3,376,664 + Ga0059261_3242 0.81 +1.2
3,376,665 - Ga0059261_3242 0.81 +2.0
3,376,665 - Ga0059261_3242 0.81 -0.2
3,376,665 - Ga0059261_3242 0.81 +0.2
3,376,713 + Ga0059261_3242 0.89 -0.4
3,376,713 + Ga0059261_3242 0.89 +0.1
3,376,714 - Ga0059261_3242 0.89 -0.9
3,376,715 + Ga0059261_3242 0.89 -0.1
3,376,715 + Ga0059261_3242 0.89 -0.4
3,376,715 + Ga0059261_3242 0.89 +0.8
3,376,715 + Ga0059261_3242 0.89 +0.2
3,376,715 + Ga0059261_3242 0.89 -0.4
3,376,715 + Ga0059261_3242 0.89 -0.2
3,376,715 + Ga0059261_3242 0.89 -0.2
3,376,715 + Ga0059261_3242 0.89 +0.1
3,376,715 + Ga0059261_3242 0.89 +0.1
3,376,715 + Ga0059261_3242 0.89 -0.1
3,376,715 - Ga0059261_3242 0.89 +0.3
3,376,716 - Ga0059261_3242 0.89 +0.6
3,376,716 - Ga0059261_3242 0.89 -0.2
3,376,716 - Ga0059261_3242 0.89 +0.3
3,376,716 - +0.2
3,376,716 - Ga0059261_3242 0.89 -0.4
3,376,716 - Ga0059261_3242 0.89 -0.9
3,376,716 - Ga0059261_3242 0.89 -3.0
3,376,716 - Ga0059261_3242 0.89 +0.5
3,376,716 - Ga0059261_3242 0.89 +0.2
3,376,716 - Ga0059261_3242 0.89 +0.2
3,376,716 - Ga0059261_3242 0.89 +0.6
3,376,716 - Ga0059261_3242 0.89 -0.9
3,376,716 - Ga0059261_3242 0.89 +0.3
3,376,716 - Ga0059261_3242 0.89 +0.3
3,376,716 - Ga0059261_3242 0.89 +0.2
3,376,716 - Ga0059261_3242 0.89 +0.7
3,376,770 + +1.2
3,376,770 + -0.5
3,376,770 + +0.4
3,376,771 - -0.5
3,376,771 - +0.3
3,376,786 + +0.6
3,376,786 + +0.2
3,376,786 + -0.2
3,376,786 + -1.3
3,376,786 + +0.2
3,376,786 + -1.1
3,376,786 + +0.3
3,376,786 + +0.7
3,376,787 - +0.0
3,376,787 - -0.5
3,376,787 - +0.4
3,376,787 - -2.3
3,376,787 - +0.3
3,376,787 - +0.4
3,376,787 - +0.2
3,377,048 + Ga0059261_3243 0.15 +0.5
3,377,049 - Ga0059261_3243 0.15 +0.9
3,377,099 + Ga0059261_3243 0.18 +0.5
3,377,099 + Ga0059261_3243 0.18 -0.0
3,377,100 - Ga0059261_3243 0.18 +0.1
3,377,100 - Ga0059261_3243 0.18 +2.5
3,377,426 + Ga0059261_3243 0.38 +0.5
3,377,426 + Ga0059261_3243 0.38 -0.2
3,377,426 + Ga0059261_3243 0.38 -1.0
3,377,426 + Ga0059261_3243 0.38 +0.0
3,377,427 - Ga0059261_3243 0.38 -1.4
3,377,427 - Ga0059261_3243 0.38 -0.3
3,377,427 - Ga0059261_3243 0.38 -0.0
3,377,705 + Ga0059261_3243 0.55 -0.2
3,377,705 + Ga0059261_3243 0.55 +0.6
3,377,706 - Ga0059261_3243 0.55 +0.6
3,377,706 - Ga0059261_3243 0.55 -0.4
3,377,706 - Ga0059261_3243 0.55 +2.2
3,377,706 - Ga0059261_3243 0.55 +0.6
3,377,760 + Ga0059261_3243 0.59 +1.1
3,378,018 + Ga0059261_3243 0.74 +0.6
3,378,137 + Ga0059261_3243 0.82 +0.0
3,378,137 + Ga0059261_3243 0.82 +0.1
3,378,137 + Ga0059261_3243 0.82 -1.1
3,378,137 + Ga0059261_3243 0.82 -0.1
3,378,137 + Ga0059261_3243 0.82 +0.7
3,378,137 + Ga0059261_3243 0.82 -0.4
3,378,138 - Ga0059261_3243 0.82 -0.4
3,378,138 - Ga0059261_3243 0.82 -0.0
3,378,167 + Ga0059261_3243 0.84 -1.0
3,378,466 + -0.4
3,378,472 - -0.0
3,378,529 - +0.2
3,378,745 + Ga0059261_3244 0.30 +0.1
3,378,745 + Ga0059261_3244 0.30 -0.7
3,378,745 + Ga0059261_3244 0.30 +1.0
3,378,746 - Ga0059261_3244 0.30 -0.7
3,378,746 - Ga0059261_3244 0.30 -0.5
3,378,746 - Ga0059261_3244 0.30 -0.1
3,378,849 + Ga0059261_3244 0.40 -0.5
3,378,849 + Ga0059261_3244 0.40 +0.7
3,378,849 + Ga0059261_3244 0.40 +0.2
3,378,849 + Ga0059261_3244 0.40 +0.0
3,378,849 + Ga0059261_3244 0.40 -0.4
3,378,849 + Ga0059261_3244 0.40 -0.3
3,378,849 + Ga0059261_3244 0.40 -0.3
3,378,849 + Ga0059261_3244 0.40 -0.8
3,378,850 - Ga0059261_3244 0.40 +1.3
3,378,850 - Ga0059261_3244 0.40 -0.7
3,378,850 - Ga0059261_3244 0.40 -0.4
3,378,850 - Ga0059261_3244 0.40 -0.4
3,378,850 - Ga0059261_3244 0.40 +0.5
3,378,850 - Ga0059261_3244 0.40 +0.6
3,378,850 - Ga0059261_3244 0.40 +0.5
3,379,212 + Ga0059261_3244 0.75 -0.3
3,379,213 - Ga0059261_3244 0.75 -0.7
3,379,213 - Ga0059261_3244 0.75 -0.4
3,379,213 - Ga0059261_3244 0.75 -1.1
3,379,215 + Ga0059261_3244 0.76 -0.4
3,379,215 + Ga0059261_3244 0.76 -0.7
3,379,215 + Ga0059261_3244 0.76 -0.3
3,379,215 + Ga0059261_3244 0.76 +0.0
3,379,215 + Ga0059261_3244 0.76 -0.6
3,379,215 + Ga0059261_3244 0.76 -0.7
3,379,216 - Ga0059261_3244 0.76 +0.9
3,379,216 - Ga0059261_3244 0.76 -0.3
3,379,216 - Ga0059261_3244 0.76 -0.2
3,379,216 - Ga0059261_3244 0.76 +0.3
3,379,216 - Ga0059261_3244 0.76 -0.3
3,379,216 - Ga0059261_3244 0.76 +1.1
3,379,216 - Ga0059261_3244 0.76 -0.5
3,379,424 - +0.0
3,379,424 - +0.2
3,379,424 - +0.4
3,379,424 - -0.1

Or see this region's nucleotide sequence