Experiment: Chloramphenicol 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1525 and Ga0059261_1526 are separated by 106 nucleotides Ga0059261_1526 and Ga0059261_1527 are separated by 20 nucleotides Ga0059261_1527 and Ga0059261_1528 are separated by 201 nucleotides Ga0059261_1528 and Ga0059261_1529 overlap by 4 nucleotides
Ga0059261_1525: Ga0059261_1525 - Domain of unknown function (DUF4349), at 1,605,109 to 1,605,918
_1525
Ga0059261_1526: Ga0059261_1526 - phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6), at 1,606,025 to 1,606,807
_1526
Ga0059261_1527: Ga0059261_1527 - hypothetical protein, at 1,606,828 to 1,606,977
_1527
Ga0059261_1528: Ga0059261_1528 - phosphoribosylformylglycinamidine synthase, purS protein, at 1,607,179 to 1,607,424
_1528
Ga0059261_1529: Ga0059261_1529 - phosphoribosylformylglycinamidine synthase I, at 1,607,421 to 1,608,086
_1529
Position (kb)
1606
1607 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1606.805 kb on + strand at 1606.805 kb on + strand at 1606.805 kb on + strand at 1606.805 kb on + strand at 1606.805 kb on + strand at 1606.805 kb on + strand at 1606.805 kb on + strand at 1606.806 kb on - strand at 1606.806 kb on - strand at 1606.806 kb on - strand at 1606.806 kb on - strand at 1606.806 kb on - strand at 1606.896 kb on + strand, within Ga0059261_1527 at 1606.896 kb on + strand, within Ga0059261_1527 at 1606.897 kb on - strand, within Ga0059261_1527 at 1606.897 kb on - strand, within Ga0059261_1527 at 1606.980 kb on + strand at 1606.980 kb on + strand at 1606.980 kb on + strand at 1606.980 kb on + strand at 1606.981 kb on - strand at 1606.981 kb on - strand at 1607.052 kb on - strand at 1607.147 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0005 mg/ml remove 1,606,805 + -0.5 1,606,805 + -0.4 1,606,805 + -1.8 1,606,805 + -0.6 1,606,805 + -0.6 1,606,805 + -0.1 1,606,805 + -0.2 1,606,806 - -0.3 1,606,806 - -0.4 1,606,806 - +0.3 1,606,806 - +1.0 1,606,806 - -0.1 1,606,896 + Ga0059261_1527 0.45 -0.1 1,606,896 + Ga0059261_1527 0.45 +1.5 1,606,897 - Ga0059261_1527 0.46 -0.3 1,606,897 - Ga0059261_1527 0.46 +0.8 1,606,980 + -0.6 1,606,980 + +0.8 1,606,980 + -0.8 1,606,980 + -0.7 1,606,981 - +0.6 1,606,981 - -0.6 1,607,052 - -0.5 1,607,147 + +2.2
Or see this region's nucleotide sequence