Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0795

Experiment: Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0793 and Ga0059261_0794 are separated by 74 nucleotidesGa0059261_0794 and Ga0059261_0795 are separated by 129 nucleotidesGa0059261_0795 and Ga0059261_0796 overlap by 4 nucleotidesGa0059261_0796 and Ga0059261_0797 are separated by 29 nucleotides Ga0059261_0793: Ga0059261_0793 - Dipeptidyl aminopeptidases/acylaminoacyl-peptidases, at 834,440 to 836,410 _0793 Ga0059261_0794: Ga0059261_0794 - hypothetical protein, at 836,485 to 837,270 _0794 Ga0059261_0795: Ga0059261_0795 - Glutathione S-transferase, at 837,400 to 838,071 _0795 Ga0059261_0796: Ga0059261_0796 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 838,068 to 838,514 _0796 Ga0059261_0797: Ga0059261_0797 - succinyldiaminopimelate desuccinylase (EC 3.5.1.18), at 838,544 to 839,665 _0797 Position (kb) 837 838 839Strain fitness (log2 ratio) -2 -1 0 1 2at 836.401 kb on + strandat 836.401 kb on + strandat 836.401 kb on + strandat 836.401 kb on + strandat 836.401 kb on + strandat 836.402 kb on - strandat 836.402 kb on - strandat 836.443 kb on + strandat 836.443 kb on + strandat 836.443 kb on + strandat 836.443 kb on + strandat 836.443 kb on + strandat 836.443 kb on + strandat 836.444 kb on - strandat 836.444 kb on - strandat 836.444 kb on - strandat 836.444 kb on - strandat 836.444 kb on - strandat 836.603 kb on + strand, within Ga0059261_0794at 836.604 kb on - strand, within Ga0059261_0794at 836.604 kb on - strand, within Ga0059261_0794at 836.604 kb on - strand, within Ga0059261_0794at 836.604 kb on - strand, within Ga0059261_0794at 836.684 kb on + strand, within Ga0059261_0794at 836.685 kb on - strand, within Ga0059261_0794at 836.736 kb on - strand, within Ga0059261_0794at 836.769 kb on - strand, within Ga0059261_0794at 836.789 kb on + strand, within Ga0059261_0794at 836.789 kb on + strand, within Ga0059261_0794at 836.789 kb on + strand, within Ga0059261_0794at 836.789 kb on + strand, within Ga0059261_0794at 836.790 kb on - strand, within Ga0059261_0794at 836.790 kb on - strand, within Ga0059261_0794at 836.790 kb on - strand, within Ga0059261_0794at 836.790 kb on - strand, within Ga0059261_0794at 836.944 kb on - strand, within Ga0059261_0794at 836.944 kb on - strand, within Ga0059261_0794at 837.069 kb on + strand, within Ga0059261_0794at 837.070 kb on - strand, within Ga0059261_0794at 837.113 kb on + strand, within Ga0059261_0794at 837.114 kb on - strand, within Ga0059261_0794at 837.259 kb on + strandat 837.259 kb on + strandat 837.259 kb on + strandat 837.259 kb on + strandat 837.259 kb on + strandat 837.259 kb on + strandat 837.260 kb on - strandat 837.260 kb on - strandat 837.260 kb on - strandat 837.260 kb on - strandat 837.260 kb on - strandat 837.264 kb on + strandat 837.265 kb on - strandat 837.265 kb on - strandat 837.265 kb on - strandat 837.265 kb on - strandat 837.286 kb on + strandat 837.430 kb on + strandat 837.430 kb on + strandat 837.430 kb on + strandat 837.430 kb on + strandat 837.430 kb on + strandat 837.430 kb on + strandat 837.430 kb on + strandat 837.430 kb on + strandat 837.431 kb on - strandat 837.431 kb on - strandat 837.431 kb on - strandat 837.431 kb on - strandat 837.508 kb on + strand, within Ga0059261_0795at 837.625 kb on + strand, within Ga0059261_0795at 837.625 kb on + strand, within Ga0059261_0795at 837.625 kb on + strand, within Ga0059261_0795at 837.626 kb on - strand, within Ga0059261_0795at 837.626 kb on - strand, within Ga0059261_0795at 837.766 kb on + strand, within Ga0059261_0795at 837.766 kb on + strand, within Ga0059261_0795at 837.767 kb on - strand, within Ga0059261_0795at 837.767 kb on - strand, within Ga0059261_0795at 837.767 kb on - strand, within Ga0059261_0795at 837.767 kb on - strand, within Ga0059261_0795at 837.767 kb on - strand, within Ga0059261_0795at 837.767 kb on - strand, within Ga0059261_0795at 837.767 kb on - strand, within Ga0059261_0795at 837.767 kb on - strand, within Ga0059261_0795at 837.932 kb on - strand, within Ga0059261_0795at 837.932 kb on - strand, within Ga0059261_0795at 837.964 kb on + strand, within Ga0059261_0795at 837.964 kb on + strand, within Ga0059261_0795at 837.964 kb on + strand, within Ga0059261_0795at 837.965 kb on - strand, within Ga0059261_0795at 837.965 kb on - strand, within Ga0059261_0795at 837.966 kb on + strand, within Ga0059261_0795at 837.966 kb on + strand, within Ga0059261_0795at 837.967 kb on - strand, within Ga0059261_0795at 837.967 kb on - strand, within Ga0059261_0795at 837.967 kb on - strand, within Ga0059261_0795at 837.967 kb on - strand, within Ga0059261_0795at 837.991 kb on + strand, within Ga0059261_0795at 837.991 kb on + strand, within Ga0059261_0795at 837.991 kb on + strand, within Ga0059261_0795at 837.991 kb on + strand, within Ga0059261_0795at 837.991 kb on + strand, within Ga0059261_0795at 837.991 kb on + strand, within Ga0059261_0795at 837.991 kb on + strand, within Ga0059261_0795at 837.991 kb on + strand, within Ga0059261_0795at 837.991 kb on + strand, within Ga0059261_0795at 837.991 kb on + strand, within Ga0059261_0795at 837.991 kb on + strand, within Ga0059261_0795at 837.992 kb on - strand, within Ga0059261_0795at 837.992 kb on - strand, within Ga0059261_0795at 837.992 kb on - strand, within Ga0059261_0795at 837.992 kb on - strand, within Ga0059261_0795at 837.992 kb on - strand, within Ga0059261_0795at 837.992 kb on - strand, within Ga0059261_0795at 837.992 kb on - strand, within Ga0059261_0795at 837.992 kb on - strand, within Ga0059261_0795at 837.992 kb on - strand, within Ga0059261_0795at 837.992 kb on - strand, within Ga0059261_0795at 837.992 kb on - strand, within Ga0059261_0795at 837.992 kb on - strand, within Ga0059261_0795at 837.992 kb on - strand, within Ga0059261_0795at 837.992 kb on - strand, within Ga0059261_0795at 837.992 kb on - strand, within Ga0059261_0795at 838.069 kb on + strandat 838.070 kb on - strandat 838.070 kb on - strandat 838.070 kb on - strandat 838.070 kb on - strandat 838.136 kb on - strand, within Ga0059261_0796at 838.174 kb on + strand, within Ga0059261_0796at 838.493 kb on + strandat 838.493 kb on + strandat 838.493 kb on + strandat 838.493 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0005 mg/ml
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836,401 + -0.3
836,401 + +0.3
836,401 + -0.1
836,401 + -0.1
836,401 + +0.3
836,402 - +0.1
836,402 - +1.9
836,443 + -0.2
836,443 + +0.3
836,443 + -0.9
836,443 + +1.5
836,443 + -0.1
836,443 + -0.9
836,444 - +0.3
836,444 - -0.3
836,444 - -0.3
836,444 - +0.5
836,444 - -0.1
836,603 + Ga0059261_0794 0.15 -0.1
836,604 - Ga0059261_0794 0.15 +0.3
836,604 - Ga0059261_0794 0.15 +0.0
836,604 - Ga0059261_0794 0.15 +0.3
836,604 - Ga0059261_0794 0.15 -0.2
836,684 + Ga0059261_0794 0.25 +0.8
836,685 - Ga0059261_0794 0.25 -1.0
836,736 - Ga0059261_0794 0.32 +0.3
836,769 - Ga0059261_0794 0.36 +0.3
836,789 + Ga0059261_0794 0.39 -0.2
836,789 + Ga0059261_0794 0.39 +1.2
836,789 + Ga0059261_0794 0.39 +1.5
836,789 + Ga0059261_0794 0.39 -0.3
836,790 - Ga0059261_0794 0.39 -0.1
836,790 - Ga0059261_0794 0.39 +0.9
836,790 - Ga0059261_0794 0.39 +1.0
836,790 - Ga0059261_0794 0.39 -2.4
836,944 - Ga0059261_0794 0.58 -0.1
836,944 - Ga0059261_0794 0.58 -0.9
837,069 + Ga0059261_0794 0.74 +0.0
837,070 - Ga0059261_0794 0.74 -0.1
837,113 + Ga0059261_0794 0.80 -0.2
837,114 - Ga0059261_0794 0.80 -0.1
837,259 + +0.0
837,259 + +0.3
837,259 + +0.1
837,259 + -0.4
837,259 + -0.1
837,259 + +0.9
837,260 - +0.9
837,260 - +1.8
837,260 - -2.1
837,260 - +0.4
837,260 - +0.4
837,264 + +0.3
837,265 - +0.7
837,265 - +0.2
837,265 - +0.5
837,265 - -0.5
837,286 + -0.4
837,430 + -0.3
837,430 + +0.8
837,430 + +0.3
837,430 + -0.0
837,430 + +0.1
837,430 + -0.1
837,430 + -0.5
837,430 + -0.0
837,431 - +0.7
837,431 - +0.3
837,431 - -1.4
837,431 - -0.4
837,508 + Ga0059261_0795 0.16 +0.4
837,625 + Ga0059261_0795 0.33 +0.4
837,625 + Ga0059261_0795 0.33 +0.5
837,625 + Ga0059261_0795 0.33 +0.4
837,626 - Ga0059261_0795 0.34 +0.4
837,626 - Ga0059261_0795 0.34 -0.4
837,766 + Ga0059261_0795 0.54 +0.1
837,766 + Ga0059261_0795 0.54 -0.5
837,767 - Ga0059261_0795 0.55 -1.8
837,767 - Ga0059261_0795 0.55 +2.2
837,767 - Ga0059261_0795 0.55 +0.3
837,767 - Ga0059261_0795 0.55 +0.6
837,767 - Ga0059261_0795 0.55 -0.4
837,767 - Ga0059261_0795 0.55 -0.3
837,767 - Ga0059261_0795 0.55 -0.3
837,767 - Ga0059261_0795 0.55 -0.1
837,932 - Ga0059261_0795 0.79 -0.3
837,932 - Ga0059261_0795 0.79 +0.3
837,964 + Ga0059261_0795 0.84 -0.0
837,964 + Ga0059261_0795 0.84 -0.4
837,964 + Ga0059261_0795 0.84 +0.2
837,965 - Ga0059261_0795 0.84 +0.6
837,965 - Ga0059261_0795 0.84 -0.2
837,966 + Ga0059261_0795 0.84 +0.6
837,966 + Ga0059261_0795 0.84 +0.1
837,967 - Ga0059261_0795 0.84 +0.6
837,967 - Ga0059261_0795 0.84 -1.0
837,967 - Ga0059261_0795 0.84 +0.5
837,967 - Ga0059261_0795 0.84 +1.2
837,991 + Ga0059261_0795 0.88 -1.3
837,991 + Ga0059261_0795 0.88 +0.3
837,991 + Ga0059261_0795 0.88 -0.1
837,991 + Ga0059261_0795 0.88 +0.6
837,991 + Ga0059261_0795 0.88 +0.9
837,991 + Ga0059261_0795 0.88 -1.8
837,991 + Ga0059261_0795 0.88 +0.0
837,991 + Ga0059261_0795 0.88 -0.6
837,991 + Ga0059261_0795 0.88 +0.4
837,991 + Ga0059261_0795 0.88 +1.4
837,991 + Ga0059261_0795 0.88 -0.4
837,992 - Ga0059261_0795 0.88 +0.4
837,992 - Ga0059261_0795 0.88 +0.5
837,992 - Ga0059261_0795 0.88 +1.2
837,992 - Ga0059261_0795 0.88 +0.7
837,992 - Ga0059261_0795 0.88 -1.7
837,992 - Ga0059261_0795 0.88 -0.7
837,992 - Ga0059261_0795 0.88 -0.2
837,992 - Ga0059261_0795 0.88 +0.3
837,992 - Ga0059261_0795 0.88 -1.1
837,992 - Ga0059261_0795 0.88 +0.3
837,992 - Ga0059261_0795 0.88 -0.8
837,992 - Ga0059261_0795 0.88 +1.0
837,992 - Ga0059261_0795 0.88 +0.2
837,992 - Ga0059261_0795 0.88 +0.9
837,992 - Ga0059261_0795 0.88 +0.5
838,069 + +0.4
838,070 - -0.6
838,070 - +1.8
838,070 - +0.1
838,070 - +0.3
838,136 - Ga0059261_0796 0.15 -0.1
838,174 + Ga0059261_0796 0.24 +0.3
838,493 + -1.4
838,493 + -0.1
838,493 + -0.0
838,493 + -0.3

Or see this region's nucleotide sequence