Experiment: Chloramphenicol 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0625 and Ga0059261_0626 overlap by 4 nucleotides Ga0059261_0626 and Ga0059261_0627 overlap by 4 nucleotides Ga0059261_0627 and Ga0059261_0628 overlap by 4 nucleotides Ga0059261_0628 and Ga0059261_0629 overlap by 47 nucleotides
Ga0059261_0625: Ga0059261_0625 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 665,151 to 666,164
_0625
Ga0059261_0626: Ga0059261_0626 - Fructose-2,6-bisphosphatase, at 666,161 to 666,730
_0626
Ga0059261_0627: Ga0059261_0627 - cobalamin-5'-phosphate synthase (EC 2.7.8.26), at 666,727 to 667,443
_0627
Ga0059261_0628: Ga0059261_0628 - L-threonine O-3-phosphate decarboxylase (EC 4.1.1.81), at 667,440 to 668,399
_0628
Ga0059261_0629: Ga0059261_0629 - cobalamin biosynthesis protein CobD, at 668,353 to 669,324
_0629
Position (kb) 666
667
668 Strain fitness (log2 ratio) -1
0
1 at 665.738 kb on + strand, within Ga0059261_0625 at 666.179 kb on + strand at 666.179 kb on + strand at 666.180 kb on - strand at 666.180 kb on - strand at 666.180 kb on - strand at 666.180 kb on - strand at 666.180 kb on - strand at 666.180 kb on - strand at 666.256 kb on + strand, within Ga0059261_0626 at 666.257 kb on - strand, within Ga0059261_0626 at 666.257 kb on - strand, within Ga0059261_0626 at 666.656 kb on + strand, within Ga0059261_0626 at 666.656 kb on + strand, within Ga0059261_0626 at 666.657 kb on - strand, within Ga0059261_0626 at 666.885 kb on + strand, within Ga0059261_0627 at 667.635 kb on + strand, within Ga0059261_0628 at 667.636 kb on - strand at 667.728 kb on + strand, within Ga0059261_0628 at 667.743 kb on + strand, within Ga0059261_0628 at 667.744 kb on - strand, within Ga0059261_0628 at 668.121 kb on + strand, within Ga0059261_0628 at 668.121 kb on + strand, within Ga0059261_0628 at 668.121 kb on + strand, within Ga0059261_0628 at 668.121 kb on + strand, within Ga0059261_0628 at 668.121 kb on + strand, within Ga0059261_0628 at 668.122 kb on - strand, within Ga0059261_0628 at 668.122 kb on - strand, within Ga0059261_0628 at 668.317 kb on - strand at 668.317 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0005 mg/ml remove 665,738 + Ga0059261_0625 0.58 -0.3 666,179 + -0.6 666,179 + +0.3 666,180 - -0.4 666,180 - -1.6 666,180 - -0.1 666,180 - +0.3 666,180 - +0.3 666,180 - +0.8 666,256 + Ga0059261_0626 0.17 -0.6 666,257 - Ga0059261_0626 0.17 -0.2 666,257 - Ga0059261_0626 0.17 -0.6 666,656 + Ga0059261_0626 0.87 +0.1 666,656 + Ga0059261_0626 0.87 -0.6 666,657 - Ga0059261_0626 0.87 -0.2 666,885 + Ga0059261_0627 0.22 -0.8 667,635 + Ga0059261_0628 0.20 -0.8 667,636 - -0.1 667,728 + Ga0059261_0628 0.30 +0.3 667,743 + Ga0059261_0628 0.32 -0.4 667,744 - Ga0059261_0628 0.32 -0.4 668,121 + Ga0059261_0628 0.71 -0.7 668,121 + Ga0059261_0628 0.71 -0.4 668,121 + Ga0059261_0628 0.71 +1.2 668,121 + Ga0059261_0628 0.71 -0.7 668,121 + Ga0059261_0628 0.71 -0.4 668,122 - Ga0059261_0628 0.71 +1.2 668,122 - Ga0059261_0628 0.71 +0.2 668,317 - -0.1 668,317 - -0.5
Or see this region's nucleotide sequence