Experiment: Chloramphenicol 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0595 and Ga0059261_0596 are separated by 62 nucleotides Ga0059261_0596 and Ga0059261_0597 overlap by 4 nucleotides Ga0059261_0597 and Ga0059261_0598 are separated by 21 nucleotides
Ga0059261_0595: Ga0059261_0595 - heavy metal efflux pump, CzcA family, at 627,286 to 630,516
_0595
Ga0059261_0596: Ga0059261_0596 - Cation efflux family, at 630,579 to 631,184
_0596
Ga0059261_0597: Ga0059261_0597 - hypothetical protein, at 631,181 to 631,396
_0597
Ga0059261_0598: Ga0059261_0598 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family, at 631,418 to 633,082
_0598
Position (kb) 630
631
632 Strain fitness (log2 ratio) -2
-1
0
1
2 at 629.923 kb on + strand, within Ga0059261_0595 at 629.924 kb on - strand, within Ga0059261_0595 at 630.022 kb on + strand, within Ga0059261_0595 at 630.022 kb on + strand, within Ga0059261_0595 at 630.023 kb on - strand, within Ga0059261_0595 at 630.430 kb on + strand at 630.430 kb on + strand at 630.430 kb on + strand at 630.431 kb on - strand at 630.431 kb on - strand at 630.514 kb on + strand at 630.515 kb on - strand at 630.515 kb on - strand at 630.744 kb on + strand, within Ga0059261_0596 at 630.744 kb on + strand, within Ga0059261_0596 at 630.744 kb on + strand, within Ga0059261_0596 at 630.745 kb on - strand at 630.928 kb on + strand, within Ga0059261_0596 at 630.928 kb on + strand, within Ga0059261_0596 at 630.928 kb on + strand, within Ga0059261_0596 at 630.928 kb on + strand, within Ga0059261_0596 at 630.976 kb on + strand, within Ga0059261_0596 at 630.976 kb on + strand, within Ga0059261_0596 at 630.976 kb on + strand, within Ga0059261_0596 at 630.977 kb on - strand, within Ga0059261_0596 at 630.977 kb on - strand, within Ga0059261_0596 at 631.105 kb on + strand, within Ga0059261_0596 at 631.188 kb on + strand at 631.188 kb on + strand at 631.188 kb on + strand at 631.189 kb on - strand at 631.360 kb on + strand, within Ga0059261_0597 at 631.360 kb on + strand, within Ga0059261_0597 at 631.360 kb on + strand, within Ga0059261_0597 at 631.360 kb on + strand at 631.360 kb on + strand, within Ga0059261_0597 at 631.360 kb on + strand, within Ga0059261_0597 at 631.361 kb on - strand, within Ga0059261_0597 at 631.361 kb on - strand, within Ga0059261_0597 at 631.361 kb on - strand, within Ga0059261_0597 at 631.530 kb on + strand at 631.530 kb on + strand at 631.530 kb on + strand at 631.530 kb on + strand at 631.530 kb on + strand at 631.530 kb on + strand at 631.572 kb on + strand at 631.572 kb on + strand at 631.572 kb on + strand at 631.572 kb on + strand at 631.572 kb on + strand at 631.573 kb on - strand at 631.573 kb on - strand at 631.573 kb on - strand at 631.573 kb on - strand at 631.573 kb on - strand at 631.581 kb on + strand at 631.581 kb on + strand at 631.582 kb on - strand at 631.689 kb on + strand, within Ga0059261_0598 at 631.689 kb on + strand, within Ga0059261_0598 at 631.689 kb on + strand, within Ga0059261_0598 at 631.689 kb on + strand, within Ga0059261_0598 at 631.690 kb on - strand, within Ga0059261_0598 at 631.690 kb on - strand, within Ga0059261_0598 at 631.690 kb on - strand, within Ga0059261_0598 at 631.690 kb on - strand, within Ga0059261_0598 at 631.705 kb on + strand, within Ga0059261_0598 at 631.706 kb on - strand, within Ga0059261_0598 at 631.706 kb on - strand, within Ga0059261_0598 at 631.706 kb on - strand, within Ga0059261_0598 at 631.706 kb on - strand, within Ga0059261_0598 at 631.823 kb on - strand, within Ga0059261_0598 at 632.052 kb on - strand, within Ga0059261_0598
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0005 mg/ml remove 629,923 + Ga0059261_0595 0.82 -0.1 629,924 - Ga0059261_0595 0.82 -1.2 630,022 + Ga0059261_0595 0.85 +0.1 630,022 + Ga0059261_0595 0.85 -0.2 630,023 - Ga0059261_0595 0.85 +0.1 630,430 + +0.1 630,430 + -0.6 630,430 + -0.4 630,431 - -0.1 630,431 - -0.7 630,514 + +1.1 630,515 - -0.6 630,515 - -0.7 630,744 + Ga0059261_0596 0.27 -0.0 630,744 + Ga0059261_0596 0.27 +1.6 630,744 + Ga0059261_0596 0.27 -0.5 630,745 - +0.6 630,928 + Ga0059261_0596 0.58 +0.3 630,928 + Ga0059261_0596 0.58 +0.3 630,928 + Ga0059261_0596 0.58 +0.6 630,928 + Ga0059261_0596 0.58 -0.6 630,976 + Ga0059261_0596 0.66 +0.1 630,976 + Ga0059261_0596 0.66 +1.2 630,976 + Ga0059261_0596 0.66 +0.5 630,977 - Ga0059261_0596 0.66 +0.6 630,977 - Ga0059261_0596 0.66 +2.1 631,105 + Ga0059261_0596 0.87 -2.0 631,188 + -0.4 631,188 + -1.2 631,188 + +0.7 631,189 - +0.6 631,360 + Ga0059261_0597 0.83 +0.6 631,360 + Ga0059261_0597 0.83 +0.6 631,360 + Ga0059261_0597 0.83 +0.3 631,360 + -0.4 631,360 + Ga0059261_0597 0.83 +0.1 631,360 + Ga0059261_0597 0.83 -0.3 631,361 - Ga0059261_0597 0.83 +0.0 631,361 - Ga0059261_0597 0.83 -0.0 631,361 - Ga0059261_0597 0.83 -0.8 631,530 + -0.1 631,530 + +0.3 631,530 + +1.6 631,530 + +0.8 631,530 + +0.4 631,530 + +0.2 631,572 + -0.2 631,572 + +0.1 631,572 + -1.2 631,572 + +0.4 631,572 + -0.1 631,573 - -0.6 631,573 - -0.3 631,573 - +1.0 631,573 - -0.7 631,573 - +1.2 631,581 + +0.3 631,581 + +0.1 631,582 - -0.2 631,689 + Ga0059261_0598 0.16 -0.5 631,689 + Ga0059261_0598 0.16 +0.5 631,689 + Ga0059261_0598 0.16 +0.9 631,689 + Ga0059261_0598 0.16 +0.5 631,690 - Ga0059261_0598 0.16 -0.1 631,690 - Ga0059261_0598 0.16 +0.3 631,690 - Ga0059261_0598 0.16 -0.6 631,690 - Ga0059261_0598 0.16 -0.0 631,705 + Ga0059261_0598 0.17 +0.2 631,706 - Ga0059261_0598 0.17 +0.1 631,706 - Ga0059261_0598 0.17 +1.2 631,706 - Ga0059261_0598 0.17 -0.4 631,706 - Ga0059261_0598 0.17 +1.8 631,823 - Ga0059261_0598 0.24 -0.4 632,052 - Ga0059261_0598 0.38 -0.2
Or see this region's nucleotide sequence