Experiment: Chloramphenicol 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0442 and Ga0059261_0443 are separated by 336 nucleotides Ga0059261_0443 and Ga0059261_0444 overlap by 4 nucleotides Ga0059261_0444 and Ga0059261_0445 are separated by 3 nucleotides Ga0059261_0445 and Ga0059261_0446 are separated by 276 nucleotides
Ga0059261_0442: Ga0059261_0442 - Autoinducer synthetase, at 429,286 to 429,584
_0442
Ga0059261_0443: Ga0059261_0443 - RNA polymerase sigma factor, sigma-70 family, at 429,921 to 430,493
_0443
Ga0059261_0444: Ga0059261_0444 - Heavy-metal resistance, at 430,490 to 430,927
_0444
Ga0059261_0445: Ga0059261_0445 - hypothetical protein, at 430,931 to 431,263
_0445
Ga0059261_0446: Ga0059261_0446 - Outer membrane receptor proteins, mostly Fe transport, at 431,540 to 433,660
_0446
Position (kb) 430
431 Strain fitness (log2 ratio) -2
-1
0
1
2 at 429.504 kb on + strand, within Ga0059261_0442 at 429.545 kb on + strand, within Ga0059261_0442 at 429.546 kb on - strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.550 kb on - strand, within Ga0059261_0442 at 429.550 kb on - strand, within Ga0059261_0442 at 429.550 kb on - strand, within Ga0059261_0442 at 429.550 kb on - strand, within Ga0059261_0442 at 429.581 kb on + strand at 429.722 kb on + strand at 429.722 kb on + strand at 429.723 kb on - strand at 429.723 kb on - strand at 429.723 kb on - strand at 429.794 kb on - strand at 429.794 kb on - strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.816 kb on - strand at 429.816 kb on - strand at 429.816 kb on - strand at 429.816 kb on - strand at 429.816 kb on - strand at 429.816 kb on - strand at 429.965 kb on - strand at 429.965 kb on - strand at 430.004 kb on - strand, within Ga0059261_0443 at 430.064 kb on + strand, within Ga0059261_0443 at 430.064 kb on + strand, within Ga0059261_0443 at 430.064 kb on + strand, within Ga0059261_0443 at 430.064 kb on + strand, within Ga0059261_0443 at 430.065 kb on - strand, within Ga0059261_0443 at 430.065 kb on - strand, within Ga0059261_0443 at 430.065 kb on - strand, within Ga0059261_0443 at 430.095 kb on + strand, within Ga0059261_0443 at 430.096 kb on - strand, within Ga0059261_0443 at 430.096 kb on - strand, within Ga0059261_0443 at 430.309 kb on + strand, within Ga0059261_0443 at 430.366 kb on + strand at 430.366 kb on + strand, within Ga0059261_0443 at 430.366 kb on + strand, within Ga0059261_0443 at 430.367 kb on - strand, within Ga0059261_0443 at 430.367 kb on - strand, within Ga0059261_0443 at 430.367 kb on - strand, within Ga0059261_0443 at 430.384 kb on + strand, within Ga0059261_0443 at 430.418 kb on + strand, within Ga0059261_0443 at 430.418 kb on + strand, within Ga0059261_0443 at 430.419 kb on - strand, within Ga0059261_0443 at 430.419 kb on - strand, within Ga0059261_0443 at 430.420 kb on + strand, within Ga0059261_0443 at 430.420 kb on + strand, within Ga0059261_0443 at 430.420 kb on + strand, within Ga0059261_0443 at 430.420 kb on + strand, within Ga0059261_0443 at 430.420 kb on + strand, within Ga0059261_0443 at 430.421 kb on - strand, within Ga0059261_0443 at 430.432 kb on + strand, within Ga0059261_0443 at 430.432 kb on + strand, within Ga0059261_0443 at 430.518 kb on - strand at 430.518 kb on - strand at 430.518 kb on - strand at 430.518 kb on - strand at 430.810 kb on + strand, within Ga0059261_0444 at 430.811 kb on - strand, within Ga0059261_0444 at 430.893 kb on - strand at 430.893 kb on - strand at 430.893 kb on - strand at 430.907 kb on - strand at 430.907 kb on - strand at 430.907 kb on - strand at 430.912 kb on + strand at 430.912 kb on + strand at 430.932 kb on + strand at 430.932 kb on + strand at 430.933 kb on - strand at 430.933 kb on - strand at 430.985 kb on + strand, within Ga0059261_0445 at 431.217 kb on - strand, within Ga0059261_0445 at 431.217 kb on - strand, within Ga0059261_0445 at 431.227 kb on + strand, within Ga0059261_0445 at 431.227 kb on + strand, within Ga0059261_0445 at 431.257 kb on + strand at 431.257 kb on + strand at 431.257 kb on + strand at 431.257 kb on + strand at 431.258 kb on - strand at 431.258 kb on - strand at 431.258 kb on - strand at 431.258 kb on - strand at 431.258 kb on - strand at 431.347 kb on + strand at 431.347 kb on + strand at 431.389 kb on + strand at 431.390 kb on - strand at 431.390 kb on - strand at 431.390 kb on - strand at 431.390 kb on - strand at 431.395 kb on + strand at 431.395 kb on + strand at 431.396 kb on - strand at 431.396 kb on - strand at 431.406 kb on + strand at 431.406 kb on + strand at 431.414 kb on + strand at 431.414 kb on + strand at 431.414 kb on + strand at 431.414 kb on + strand at 431.415 kb on - strand at 431.415 kb on - strand at 431.415 kb on - strand at 431.415 kb on - strand at 431.415 kb on - strand at 431.415 kb on - strand at 431.569 kb on + strand at 431.569 kb on + strand at 431.569 kb on + strand at 431.569 kb on + strand at 431.570 kb on - strand at 431.570 kb on - strand at 431.900 kb on + strand, within Ga0059261_0446 at 431.901 kb on - strand, within Ga0059261_0446 at 431.901 kb on - strand, within Ga0059261_0446 at 431.901 kb on - strand, within Ga0059261_0446 at 431.912 kb on + strand, within Ga0059261_0446 at 431.912 kb on + strand, within Ga0059261_0446 at 431.912 kb on + strand, within Ga0059261_0446 at 431.912 kb on + strand, within Ga0059261_0446 at 431.912 kb on + strand, within Ga0059261_0446 at 431.912 kb on + strand, within Ga0059261_0446 at 431.912 kb on + strand, within Ga0059261_0446 at 431.912 kb on + strand, within Ga0059261_0446 at 431.912 kb on + strand, within Ga0059261_0446 at 431.913 kb on - strand, within Ga0059261_0446 at 431.913 kb on - strand, within Ga0059261_0446 at 431.913 kb on - strand, within Ga0059261_0446 at 431.913 kb on - strand, within Ga0059261_0446 at 431.913 kb on - strand, within Ga0059261_0446 at 431.913 kb on - strand, within Ga0059261_0446 at 431.913 kb on - strand, within Ga0059261_0446 at 431.913 kb on - strand, within Ga0059261_0446 at 431.913 kb on - strand, within Ga0059261_0446 at 431.915 kb on - strand, within Ga0059261_0446
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0005 mg/ml remove 429,504 + Ga0059261_0442 0.73 -0.9 429,545 + Ga0059261_0442 0.87 +0.3 429,546 - Ga0059261_0442 0.87 -0.0 429,549 + Ga0059261_0442 0.88 -0.5 429,549 + Ga0059261_0442 0.88 -1.4 429,549 + Ga0059261_0442 0.88 -0.6 429,549 + Ga0059261_0442 0.88 +0.2 429,549 + Ga0059261_0442 0.88 +0.4 429,549 + Ga0059261_0442 0.88 +0.5 429,549 + Ga0059261_0442 0.88 -0.1 429,549 + Ga0059261_0442 0.88 +0.5 429,549 + Ga0059261_0442 0.88 -0.6 429,550 - Ga0059261_0442 0.88 -0.7 429,550 - Ga0059261_0442 0.88 +0.6 429,550 - Ga0059261_0442 0.88 -0.0 429,550 - Ga0059261_0442 0.88 -0.1 429,581 + -0.8 429,722 + +0.2 429,722 + -0.7 429,723 - -0.1 429,723 - -0.3 429,723 - -0.9 429,794 - +0.5 429,794 - +0.3 429,815 + +0.3 429,815 + -0.3 429,815 + +0.9 429,815 + +0.2 429,815 + +0.5 429,815 + -0.3 429,815 + -0.6 429,815 + -0.1 429,815 + -0.5 429,815 + +0.2 429,815 + +2.5 429,815 + -0.0 429,816 - -0.7 429,816 - -0.3 429,816 - -1.3 429,816 - +2.2 429,816 - +1.0 429,816 - -0.7 429,965 - +0.8 429,965 - +0.1 430,004 - Ga0059261_0443 0.14 -0.8 430,064 + Ga0059261_0443 0.25 -0.6 430,064 + Ga0059261_0443 0.25 +1.5 430,064 + Ga0059261_0443 0.25 -0.2 430,064 + Ga0059261_0443 0.25 -0.7 430,065 - Ga0059261_0443 0.25 +0.1 430,065 - Ga0059261_0443 0.25 +0.5 430,065 - Ga0059261_0443 0.25 -0.7 430,095 + Ga0059261_0443 0.30 -0.5 430,096 - Ga0059261_0443 0.31 +1.5 430,096 - Ga0059261_0443 0.31 -0.4 430,309 + Ga0059261_0443 0.68 -0.1 430,366 + +0.2 430,366 + Ga0059261_0443 0.78 -0.2 430,366 + Ga0059261_0443 0.78 +0.0 430,367 - Ga0059261_0443 0.78 +0.5 430,367 - Ga0059261_0443 0.78 -0.9 430,367 - Ga0059261_0443 0.78 -0.3 430,384 + Ga0059261_0443 0.81 -0.5 430,418 + Ga0059261_0443 0.87 -0.4 430,418 + Ga0059261_0443 0.87 -0.3 430,419 - Ga0059261_0443 0.87 +0.1 430,419 - Ga0059261_0443 0.87 -0.1 430,420 + Ga0059261_0443 0.87 -1.0 430,420 + Ga0059261_0443 0.87 +0.3 430,420 + Ga0059261_0443 0.87 +0.4 430,420 + Ga0059261_0443 0.87 +0.1 430,420 + Ga0059261_0443 0.87 +0.9 430,421 - Ga0059261_0443 0.87 -0.7 430,432 + Ga0059261_0443 0.89 +0.9 430,432 + Ga0059261_0443 0.89 -0.5 430,518 - +0.1 430,518 - -0.5 430,518 - -0.2 430,518 - -0.3 430,810 + Ga0059261_0444 0.73 +0.3 430,811 - Ga0059261_0444 0.73 +0.1 430,893 - -1.1 430,893 - -1.4 430,893 - +0.3 430,907 - +1.0 430,907 - +0.1 430,907 - -0.2 430,912 + +0.1 430,912 + -0.3 430,932 + +1.6 430,932 + -0.1 430,933 - -0.3 430,933 - -0.1 430,985 + Ga0059261_0445 0.16 -0.1 431,217 - Ga0059261_0445 0.86 +0.2 431,217 - Ga0059261_0445 0.86 +0.2 431,227 + Ga0059261_0445 0.89 -0.2 431,227 + Ga0059261_0445 0.89 -0.1 431,257 + +0.6 431,257 + -0.3 431,257 + +0.3 431,257 + +0.4 431,258 - -0.3 431,258 - +1.5 431,258 - -0.8 431,258 - -1.1 431,258 - +1.2 431,347 + -0.3 431,347 + +1.0 431,389 + -0.3 431,390 - +0.4 431,390 - +0.5 431,390 - +0.3 431,390 - -0.8 431,395 + -0.1 431,395 + +0.2 431,396 - +0.2 431,396 - -0.1 431,406 + -0.3 431,406 + +0.4 431,414 + +0.0 431,414 + +0.8 431,414 + +0.1 431,414 + +0.0 431,415 - -2.2 431,415 - -0.4 431,415 - -1.0 431,415 - +0.8 431,415 - -1.1 431,415 - -0.6 431,569 + +0.5 431,569 + +0.3 431,569 + -0.3 431,569 + +0.1 431,570 - -0.4 431,570 - +0.4 431,900 + Ga0059261_0446 0.17 +1.1 431,901 - Ga0059261_0446 0.17 -1.6 431,901 - Ga0059261_0446 0.17 -0.5 431,901 - Ga0059261_0446 0.17 -0.8 431,912 + Ga0059261_0446 0.18 +0.7 431,912 + Ga0059261_0446 0.18 -0.4 431,912 + Ga0059261_0446 0.18 -0.3 431,912 + Ga0059261_0446 0.18 -0.4 431,912 + Ga0059261_0446 0.18 +0.6 431,912 + Ga0059261_0446 0.18 -1.1 431,912 + Ga0059261_0446 0.18 -0.5 431,912 + Ga0059261_0446 0.18 +0.5 431,912 + Ga0059261_0446 0.18 +0.2 431,913 - Ga0059261_0446 0.18 +0.0 431,913 - Ga0059261_0446 0.18 +1.0 431,913 - Ga0059261_0446 0.18 +0.0 431,913 - Ga0059261_0446 0.18 +0.7 431,913 - Ga0059261_0446 0.18 +0.1 431,913 - Ga0059261_0446 0.18 +0.0 431,913 - Ga0059261_0446 0.18 +0.1 431,913 - Ga0059261_0446 0.18 -0.2 431,913 - Ga0059261_0446 0.18 +1.2 431,915 - Ga0059261_0446 0.18 +0.1
Or see this region's nucleotide sequence