Experiment: Chloramphenicol 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0243 and Ga0059261_0244 are separated by 59 nucleotides Ga0059261_0244 and Ga0059261_0245 are separated by 104 nucleotides
Ga0059261_0243: Ga0059261_0243 - Major Facilitator Superfamily, at 232,905 to 234,578
_0243
Ga0059261_0244: Ga0059261_0244 - FOG: CheY-like receiver, at 234,638 to 235,069
_0244
Ga0059261_0245: Ga0059261_0245 - pseudouridine synthase, at 235,174 to 236,376
_0245
Position (kb) 234
235
236 Strain fitness (log2 ratio) -2
-1
0
1
2 at 233.797 kb on + strand, within Ga0059261_0243 at 233.798 kb on - strand, within Ga0059261_0243 at 233.798 kb on - strand, within Ga0059261_0243 at 233.798 kb on - strand, within Ga0059261_0243 at 233.866 kb on + strand, within Ga0059261_0243 at 233.866 kb on + strand, within Ga0059261_0243 at 233.866 kb on + strand, within Ga0059261_0243 at 233.866 kb on + strand, within Ga0059261_0243 at 233.867 kb on - strand, within Ga0059261_0243 at 233.867 kb on - strand, within Ga0059261_0243 at 233.867 kb on - strand, within Ga0059261_0243 at 233.867 kb on - strand, within Ga0059261_0243 at 233.899 kb on + strand, within Ga0059261_0243 at 233.900 kb on - strand, within Ga0059261_0243 at 233.900 kb on - strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.044 kb on - strand, within Ga0059261_0243 at 234.044 kb on - strand, within Ga0059261_0243 at 234.044 kb on - strand, within Ga0059261_0243 at 234.044 kb on - strand at 234.044 kb on - strand, within Ga0059261_0243 at 234.044 kb on - strand at 234.088 kb on + strand, within Ga0059261_0243 at 234.089 kb on - strand, within Ga0059261_0243 at 234.146 kb on - strand, within Ga0059261_0243 at 234.146 kb on - strand, within Ga0059261_0243 at 234.370 kb on + strand, within Ga0059261_0243 at 234.370 kb on + strand at 234.370 kb on + strand, within Ga0059261_0243 at 234.371 kb on - strand, within Ga0059261_0243 at 234.371 kb on - strand at 234.371 kb on - strand, within Ga0059261_0243 at 234.371 kb on - strand, within Ga0059261_0243 at 234.410 kb on + strand, within Ga0059261_0243 at 234.410 kb on + strand, within Ga0059261_0243 at 234.410 kb on + strand, within Ga0059261_0243 at 234.411 kb on - strand at 234.411 kb on - strand at 234.411 kb on - strand at 234.411 kb on - strand at 234.520 kb on + strand at 234.611 kb on - strand at 234.747 kb on + strand, within Ga0059261_0244 at 234.747 kb on + strand, within Ga0059261_0244 at 234.965 kb on - strand, within Ga0059261_0244 at 235.086 kb on + strand at 235.086 kb on + strand at 235.086 kb on + strand at 235.087 kb on - strand at 235.105 kb on - strand at 235.105 kb on - strand at 235.161 kb on + strand at 235.162 kb on - strand at 235.466 kb on - strand, within Ga0059261_0245 at 235.607 kb on - strand, within Ga0059261_0245 at 235.621 kb on + strand, within Ga0059261_0245 at 235.687 kb on + strand, within Ga0059261_0245
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0005 mg/ml remove 233,797 + Ga0059261_0243 0.53 +0.4 233,798 - Ga0059261_0243 0.53 -0.7 233,798 - Ga0059261_0243 0.53 +0.2 233,798 - Ga0059261_0243 0.53 +0.4 233,866 + Ga0059261_0243 0.57 -0.0 233,866 + Ga0059261_0243 0.57 +1.8 233,866 + Ga0059261_0243 0.57 +0.6 233,866 + Ga0059261_0243 0.57 +0.2 233,867 - Ga0059261_0243 0.57 -0.1 233,867 - Ga0059261_0243 0.57 -1.6 233,867 - Ga0059261_0243 0.57 +0.6 233,867 - Ga0059261_0243 0.57 +0.5 233,899 + Ga0059261_0243 0.59 -0.5 233,900 - Ga0059261_0243 0.59 +0.1 233,900 - Ga0059261_0243 0.59 -0.5 234,043 + Ga0059261_0243 0.68 -0.9 234,043 + Ga0059261_0243 0.68 +0.9 234,043 + Ga0059261_0243 0.68 -0.2 234,043 + Ga0059261_0243 0.68 -1.2 234,043 + Ga0059261_0243 0.68 +0.9 234,043 + Ga0059261_0243 0.68 -0.6 234,043 + Ga0059261_0243 0.68 +0.6 234,043 + Ga0059261_0243 0.68 -0.2 234,043 + Ga0059261_0243 0.68 -0.4 234,043 + Ga0059261_0243 0.68 -0.8 234,044 - Ga0059261_0243 0.68 +0.9 234,044 - Ga0059261_0243 0.68 +0.1 234,044 - Ga0059261_0243 0.68 -0.2 234,044 - +1.2 234,044 - Ga0059261_0243 0.68 -0.6 234,044 - -0.4 234,088 + Ga0059261_0243 0.71 -0.1 234,089 - Ga0059261_0243 0.71 +1.2 234,146 - Ga0059261_0243 0.74 -1.3 234,146 - Ga0059261_0243 0.74 -0.4 234,370 + Ga0059261_0243 0.88 +0.2 234,370 + +1.2 234,370 + Ga0059261_0243 0.88 -1.6 234,371 - Ga0059261_0243 0.88 -1.4 234,371 - -0.4 234,371 - Ga0059261_0243 0.88 -0.4 234,371 - Ga0059261_0243 0.88 -0.5 234,410 + Ga0059261_0243 0.90 -0.3 234,410 + Ga0059261_0243 0.90 -0.7 234,410 + Ga0059261_0243 0.90 +0.8 234,411 - +1.2 234,411 - -0.6 234,411 - +0.6 234,411 - +1.0 234,520 + -0.6 234,611 - +0.2 234,747 + Ga0059261_0244 0.25 +0.5 234,747 + Ga0059261_0244 0.25 +0.2 234,965 - Ga0059261_0244 0.76 -0.3 235,086 + -0.1 235,086 + -0.2 235,086 + -0.3 235,087 - +0.2 235,105 - +0.5 235,105 - -0.2 235,161 + +0.2 235,162 - -0.0 235,466 - Ga0059261_0245 0.24 -0.8 235,607 - Ga0059261_0245 0.36 -0.1 235,621 + Ga0059261_0245 0.37 -0.3 235,687 + Ga0059261_0245 0.43 -1.8
Or see this region's nucleotide sequence