Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0215

Experiment: Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0214 and Ga0059261_0215 are separated by 1 nucleotidesGa0059261_0215 and Ga0059261_0216 overlap by 4 nucleotidesGa0059261_0216 and Ga0059261_0217 are separated by 111 nucleotides Ga0059261_0214: Ga0059261_0214 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 201,532 to 203,544 _0214 Ga0059261_0215: Ga0059261_0215 - Acetyltransferase (GNAT) family, at 203,546 to 203,959 _0215 Ga0059261_0216: Ga0059261_0216 - transcription elongation factor GreB, at 203,956 to 204,441 _0216 Ga0059261_0217: Ga0059261_0217 - TonB-dependent siderophore receptor, at 204,553 to 206,676 _0217 Position (kb) 203 204Strain fitness (log2 ratio) -2 -1 0 1 2at 202.618 kb on + strand, within Ga0059261_0214at 202.619 kb on - strand, within Ga0059261_0214at 202.672 kb on + strandat 202.672 kb on + strand, within Ga0059261_0214at 202.672 kb on + strand, within Ga0059261_0214at 202.672 kb on + strand, within Ga0059261_0214at 202.673 kb on - strand, within Ga0059261_0214at 202.675 kb on + strand, within Ga0059261_0214at 202.675 kb on + strand, within Ga0059261_0214at 202.675 kb on + strand, within Ga0059261_0214at 202.676 kb on - strand, within Ga0059261_0214at 202.676 kb on - strand, within Ga0059261_0214at 202.676 kb on - strand, within Ga0059261_0214at 202.705 kb on + strand, within Ga0059261_0214at 202.705 kb on + strand, within Ga0059261_0214at 202.705 kb on + strand, within Ga0059261_0214at 202.705 kb on + strand, within Ga0059261_0214at 202.705 kb on + strand, within Ga0059261_0214at 202.706 kb on - strand, within Ga0059261_0214at 202.706 kb on - strand, within Ga0059261_0214at 202.706 kb on - strand, within Ga0059261_0214at 202.706 kb on - strand, within Ga0059261_0214at 202.706 kb on - strand, within Ga0059261_0214at 202.706 kb on - strand, within Ga0059261_0214at 202.706 kb on - strand, within Ga0059261_0214at 202.708 kb on + strand, within Ga0059261_0214at 202.708 kb on + strand, within Ga0059261_0214at 202.709 kb on - strand, within Ga0059261_0214at 202.709 kb on - strand, within Ga0059261_0214at 202.709 kb on - strand, within Ga0059261_0214at 202.804 kb on + strand, within Ga0059261_0214at 202.804 kb on + strand, within Ga0059261_0214at 202.804 kb on + strand, within Ga0059261_0214at 202.804 kb on + strand, within Ga0059261_0214at 202.805 kb on - strand, within Ga0059261_0214at 202.805 kb on - strand, within Ga0059261_0214at 202.805 kb on - strand, within Ga0059261_0214at 202.805 kb on - strand, within Ga0059261_0214at 203.008 kb on + strand, within Ga0059261_0214at 203.008 kb on + strand, within Ga0059261_0214at 203.008 kb on + strand, within Ga0059261_0214at 203.008 kb on + strand, within Ga0059261_0214at 203.008 kb on + strand, within Ga0059261_0214at 203.009 kb on - strand, within Ga0059261_0214at 203.009 kb on - strand, within Ga0059261_0214at 203.009 kb on - strand, within Ga0059261_0214at 203.009 kb on - strand, within Ga0059261_0214at 203.009 kb on - strand, within Ga0059261_0214at 203.010 kb on + strand, within Ga0059261_0214at 203.010 kb on + strand, within Ga0059261_0214at 203.011 kb on - strandat 203.011 kb on - strand, within Ga0059261_0214at 203.023 kb on + strand, within Ga0059261_0214at 203.024 kb on - strand, within Ga0059261_0214at 203.059 kb on + strand, within Ga0059261_0214at 203.059 kb on + strand, within Ga0059261_0214at 203.060 kb on - strand, within Ga0059261_0214at 203.060 kb on - strand, within Ga0059261_0214at 203.060 kb on - strand, within Ga0059261_0214at 203.197 kb on + strand, within Ga0059261_0214at 203.198 kb on - strand, within Ga0059261_0214at 203.198 kb on - strand, within Ga0059261_0214at 203.230 kb on + strand, within Ga0059261_0214at 203.231 kb on - strand, within Ga0059261_0214at 203.254 kb on + strand, within Ga0059261_0214at 203.254 kb on + strand, within Ga0059261_0214at 203.255 kb on - strand, within Ga0059261_0214at 203.255 kb on - strand, within Ga0059261_0214at 203.275 kb on + strand, within Ga0059261_0214at 203.275 kb on + strand, within Ga0059261_0214at 203.275 kb on + strand, within Ga0059261_0214at 203.276 kb on - strand, within Ga0059261_0214at 203.276 kb on - strand, within Ga0059261_0214at 203.276 kb on - strand, within Ga0059261_0214at 203.278 kb on + strand, within Ga0059261_0214at 203.278 kb on + strand, within Ga0059261_0214at 203.278 kb on + strand, within Ga0059261_0214at 203.278 kb on + strand, within Ga0059261_0214at 203.279 kb on - strand, within Ga0059261_0214at 203.290 kb on + strand, within Ga0059261_0214at 203.291 kb on - strand, within Ga0059261_0214at 203.291 kb on - strand, within Ga0059261_0214at 203.311 kb on + strand, within Ga0059261_0214at 203.311 kb on + strand, within Ga0059261_0214at 203.311 kb on + strand, within Ga0059261_0214at 203.311 kb on + strand, within Ga0059261_0214at 203.311 kb on + strand, within Ga0059261_0214at 203.311 kb on + strandat 203.311 kb on + strand, within Ga0059261_0214at 203.312 kb on - strand, within Ga0059261_0214at 203.313 kb on + strand, within Ga0059261_0214at 203.313 kb on + strand, within Ga0059261_0214at 203.313 kb on + strand, within Ga0059261_0214at 203.428 kb on + strandat 203.428 kb on + strandat 203.428 kb on + strandat 203.428 kb on + strandat 203.428 kb on + strandat 203.429 kb on - strandat 203.429 kb on - strandat 203.429 kb on - strandat 203.429 kb on - strandat 203.429 kb on - strandat 203.442 kb on - strandat 203.442 kb on - strandat 203.461 kb on + strandat 203.461 kb on + strandat 203.461 kb on + strandat 203.461 kb on + strandat 203.461 kb on + strandat 203.462 kb on - strandat 203.462 kb on - strandat 203.462 kb on - strandat 203.462 kb on - strandat 203.462 kb on - strandat 203.482 kb on + strandat 203.482 kb on + strandat 203.482 kb on + strandat 203.483 kb on - strandat 203.483 kb on - strandat 203.483 kb on - strandat 203.518 kb on + strandat 203.518 kb on + strandat 203.519 kb on - strandat 203.519 kb on - strandat 203.519 kb on - strandat 203.519 kb on - strandat 203.632 kb on + strand, within Ga0059261_0215at 203.632 kb on + strand, within Ga0059261_0215at 203.633 kb on - strand, within Ga0059261_0215at 203.633 kb on - strand, within Ga0059261_0215at 203.633 kb on - strand, within Ga0059261_0215at 203.736 kb on - strand, within Ga0059261_0215at 203.759 kb on + strand, within Ga0059261_0215at 203.759 kb on + strand, within Ga0059261_0215at 203.759 kb on + strand, within Ga0059261_0215at 203.759 kb on + strand, within Ga0059261_0215at 203.760 kb on - strand, within Ga0059261_0215at 203.851 kb on + strand, within Ga0059261_0215at 203.851 kb on + strand, within Ga0059261_0215at 203.852 kb on - strand, within Ga0059261_0215at 203.852 kb on - strand, within Ga0059261_0215at 203.919 kb on - strandat 203.919 kb on - strandat 203.919 kb on - strandat 203.977 kb on + strandat 203.977 kb on + strandat 203.977 kb on + strandat 203.977 kb on + strandat 203.977 kb on + strandat 203.978 kb on - strandat 203.978 kb on - strandat 203.978 kb on - strandat 203.978 kb on - strandat 203.978 kb on - strandat 203.978 kb on - strandat 203.978 kb on - strandat 203.978 kb on - strandat 203.978 kb on - strandat 203.978 kb on - strandat 203.996 kb on - strandat 204.016 kb on + strand, within Ga0059261_0216at 204.016 kb on + strand, within Ga0059261_0216at 204.016 kb on + strand, within Ga0059261_0216at 204.016 kb on + strand, within Ga0059261_0216at 204.016 kb on + strand, within Ga0059261_0216at 204.017 kb on + strandat 204.017 kb on - strand, within Ga0059261_0216at 204.017 kb on - strand, within Ga0059261_0216at 204.017 kb on - strand, within Ga0059261_0216at 204.017 kb on - strand, within Ga0059261_0216at 204.017 kb on - strand, within Ga0059261_0216at 204.017 kb on - strand, within Ga0059261_0216at 204.106 kb on + strand, within Ga0059261_0216at 204.106 kb on + strand, within Ga0059261_0216at 204.106 kb on + strand, within Ga0059261_0216at 204.106 kb on + strand, within Ga0059261_0216at 204.106 kb on + strand, within Ga0059261_0216at 204.106 kb on + strand, within Ga0059261_0216at 204.107 kb on - strand, within Ga0059261_0216at 204.107 kb on - strand, within Ga0059261_0216at 204.107 kb on - strand, within Ga0059261_0216at 204.107 kb on - strand, within Ga0059261_0216at 204.107 kb on - strand, within Ga0059261_0216at 204.107 kb on - strand, within Ga0059261_0216at 204.112 kb on + strand, within Ga0059261_0216at 204.112 kb on + strand, within Ga0059261_0216at 204.112 kb on + strand, within Ga0059261_0216at 204.112 kb on + strand, within Ga0059261_0216at 204.113 kb on - strand, within Ga0059261_0216at 204.214 kb on - strandat 204.214 kb on - strand, within Ga0059261_0216at 204.214 kb on - strand, within Ga0059261_0216at 204.409 kb on + strandat 204.409 kb on + strandat 204.409 kb on + strandat 204.409 kb on + strandat 204.410 kb on - strandat 204.410 kb on - strandat 204.410 kb on - strandat 204.565 kb on + strandat 204.565 kb on + strandat 204.566 kb on - strandat 204.566 kb on - strandat 204.566 kb on - strandat 204.661 kb on + strandat 204.661 kb on + strandat 204.661 kb on + strandat 204.662 kb on - strandat 204.662 kb on - strandat 204.799 kb on + strand, within Ga0059261_0217at 204.799 kb on + strand, within Ga0059261_0217at 204.799 kb on + strand, within Ga0059261_0217at 204.800 kb on - strand, within Ga0059261_0217at 204.800 kb on - strand, within Ga0059261_0217at 204.800 kb on - strand, within Ga0059261_0217at 204.801 kb on + strand, within Ga0059261_0217at 204.801 kb on + strand, within Ga0059261_0217at 204.801 kb on + strand, within Ga0059261_0217at 204.802 kb on - strand, within Ga0059261_0217at 204.877 kb on + strand, within Ga0059261_0217at 204.877 kb on + strand, within Ga0059261_0217at 204.877 kb on + strand, within Ga0059261_0217at 204.877 kb on + strand, within Ga0059261_0217at 204.878 kb on - strand, within Ga0059261_0217at 204.878 kb on - strand, within Ga0059261_0217at 204.878 kb on - strand, within Ga0059261_0217at 204.878 kb on - strand, within Ga0059261_0217at 204.878 kb on - strand, within Ga0059261_0217at 204.878 kb on - strand, within Ga0059261_0217

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0005 mg/ml
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202,618 + Ga0059261_0214 0.54 -1.3
202,619 - Ga0059261_0214 0.54 -0.6
202,672 + +0.2
202,672 + Ga0059261_0214 0.57 -0.9
202,672 + Ga0059261_0214 0.57 -1.2
202,672 + Ga0059261_0214 0.57 -0.1
202,673 - Ga0059261_0214 0.57 +1.4
202,675 + Ga0059261_0214 0.57 +0.6
202,675 + Ga0059261_0214 0.57 +0.6
202,675 + Ga0059261_0214 0.57 -0.9
202,676 - Ga0059261_0214 0.57 -1.8
202,676 - Ga0059261_0214 0.57 +0.1
202,676 - Ga0059261_0214 0.57 +0.6
202,705 + Ga0059261_0214 0.58 -0.6
202,705 + Ga0059261_0214 0.58 +1.2
202,705 + Ga0059261_0214 0.58 -0.1
202,705 + Ga0059261_0214 0.58 -0.2
202,705 + Ga0059261_0214 0.58 +0.6
202,706 - Ga0059261_0214 0.58 +0.6
202,706 - Ga0059261_0214 0.58 +0.6
202,706 - Ga0059261_0214 0.58 -0.8
202,706 - Ga0059261_0214 0.58 -0.2
202,706 - Ga0059261_0214 0.58 -0.7
202,706 - Ga0059261_0214 0.58 +1.0
202,706 - Ga0059261_0214 0.58 +0.1
202,708 + Ga0059261_0214 0.58 +0.1
202,708 + Ga0059261_0214 0.58 -0.6
202,709 - Ga0059261_0214 0.58 -0.7
202,709 - Ga0059261_0214 0.58 -0.7
202,709 - Ga0059261_0214 0.58 +0.7
202,804 + Ga0059261_0214 0.63 -2.1
202,804 + Ga0059261_0214 0.63 -0.7
202,804 + Ga0059261_0214 0.63 +1.0
202,804 + Ga0059261_0214 0.63 +1.5
202,805 - Ga0059261_0214 0.63 -1.1
202,805 - Ga0059261_0214 0.63 -0.2
202,805 - Ga0059261_0214 0.63 -1.0
202,805 - Ga0059261_0214 0.63 -0.3
203,008 + Ga0059261_0214 0.73 +0.2
203,008 + Ga0059261_0214 0.73 -0.4
203,008 + Ga0059261_0214 0.73 -0.5
203,008 + Ga0059261_0214 0.73 -0.3
203,008 + Ga0059261_0214 0.73 +1.2
203,009 - Ga0059261_0214 0.73 -0.9
203,009 - Ga0059261_0214 0.73 -0.1
203,009 - Ga0059261_0214 0.73 +0.5
203,009 - Ga0059261_0214 0.73 +0.2
203,009 - Ga0059261_0214 0.73 +0.7
203,010 + Ga0059261_0214 0.73 -0.9
203,010 + Ga0059261_0214 0.73 -0.8
203,011 - -1.2
203,011 - Ga0059261_0214 0.73 -1.2
203,023 + Ga0059261_0214 0.74 -0.6
203,024 - Ga0059261_0214 0.74 -0.4
203,059 + Ga0059261_0214 0.76 +0.1
203,059 + Ga0059261_0214 0.76 +1.2
203,060 - Ga0059261_0214 0.76 +0.2
203,060 - Ga0059261_0214 0.76 +0.2
203,060 - Ga0059261_0214 0.76 -0.1
203,197 + Ga0059261_0214 0.83 +0.7
203,198 - Ga0059261_0214 0.83 -0.1
203,198 - Ga0059261_0214 0.83 -0.7
203,230 + Ga0059261_0214 0.84 -0.1
203,231 - Ga0059261_0214 0.84 -0.3
203,254 + Ga0059261_0214 0.86 +0.6
203,254 + Ga0059261_0214 0.86 -0.0
203,255 - Ga0059261_0214 0.86 -0.6
203,255 - Ga0059261_0214 0.86 -0.2
203,275 + Ga0059261_0214 0.87 +0.9
203,275 + Ga0059261_0214 0.87 -0.9
203,275 + Ga0059261_0214 0.87 -0.8
203,276 - Ga0059261_0214 0.87 -0.3
203,276 - Ga0059261_0214 0.87 +1.2
203,276 - Ga0059261_0214 0.87 -1.6
203,278 + Ga0059261_0214 0.87 -0.6
203,278 + Ga0059261_0214 0.87 +0.4
203,278 + Ga0059261_0214 0.87 +1.2
203,278 + Ga0059261_0214 0.87 +0.5
203,279 - Ga0059261_0214 0.87 +0.9
203,290 + Ga0059261_0214 0.87 -1.2
203,291 - Ga0059261_0214 0.87 -0.6
203,291 - Ga0059261_0214 0.87 +2.2
203,311 + Ga0059261_0214 0.88 -1.4
203,311 + Ga0059261_0214 0.88 -0.2
203,311 + Ga0059261_0214 0.88 -0.4
203,311 + Ga0059261_0214 0.88 -0.7
203,311 + Ga0059261_0214 0.88 +0.4
203,311 + +2.2
203,311 + Ga0059261_0214 0.88 +1.0
203,312 - Ga0059261_0214 0.88 -0.5
203,313 + Ga0059261_0214 0.88 +0.2
203,313 + Ga0059261_0214 0.88 +1.7
203,313 + Ga0059261_0214 0.88 +0.7
203,428 + +0.7
203,428 + -0.6
203,428 + -0.6
203,428 + -0.8
203,428 + +1.2
203,429 - -0.6
203,429 - -0.3
203,429 - +0.5
203,429 - +0.0
203,429 - -1.4
203,442 - +0.8
203,442 - -1.3
203,461 + -0.0
203,461 + +0.1
203,461 + -0.0
203,461 + +0.2
203,461 + +0.8
203,462 - +0.7
203,462 - +0.8
203,462 - +0.7
203,462 - -1.0
203,462 - +0.0
203,482 + -0.9
203,482 + -0.1
203,482 + +0.6
203,483 - +0.4
203,483 - +0.2
203,483 - +0.1
203,518 + -0.3
203,518 + +0.2
203,519 - +0.2
203,519 - -1.2
203,519 - +0.3
203,519 - -1.7
203,632 + Ga0059261_0215 0.21 +0.3
203,632 + Ga0059261_0215 0.21 -0.1
203,633 - Ga0059261_0215 0.21 +0.2
203,633 - Ga0059261_0215 0.21 +2.0
203,633 - Ga0059261_0215 0.21 +0.7
203,736 - Ga0059261_0215 0.46 +0.1
203,759 + Ga0059261_0215 0.51 +1.4
203,759 + Ga0059261_0215 0.51 +0.8
203,759 + Ga0059261_0215 0.51 -0.8
203,759 + Ga0059261_0215 0.51 -0.1
203,760 - Ga0059261_0215 0.52 +0.3
203,851 + Ga0059261_0215 0.74 +0.2
203,851 + Ga0059261_0215 0.74 -0.2
203,852 - Ga0059261_0215 0.74 -0.4
203,852 - Ga0059261_0215 0.74 +0.3
203,919 - -0.5
203,919 - +0.2
203,919 - +0.2
203,977 + -0.2
203,977 + -0.4
203,977 + +0.4
203,977 + -1.8
203,977 + +0.6
203,978 - -1.5
203,978 - -0.6
203,978 - -0.8
203,978 - -0.0
203,978 - -1.3
203,978 - +0.0
203,978 - -0.7
203,978 - -0.4
203,978 - +0.0
203,978 - +1.0
203,996 - +1.5
204,016 + Ga0059261_0216 0.12 -1.6
204,016 + Ga0059261_0216 0.12 -0.2
204,016 + Ga0059261_0216 0.12 -0.6
204,016 + Ga0059261_0216 0.12 -0.5
204,016 + Ga0059261_0216 0.12 -0.3
204,017 + +1.2
204,017 - Ga0059261_0216 0.13 +0.7
204,017 - Ga0059261_0216 0.13 -0.3
204,017 - Ga0059261_0216 0.13 -0.4
204,017 - Ga0059261_0216 0.13 +0.2
204,017 - Ga0059261_0216 0.13 +0.8
204,017 - Ga0059261_0216 0.13 -1.0
204,106 + Ga0059261_0216 0.31 +0.2
204,106 + Ga0059261_0216 0.31 +0.2
204,106 + Ga0059261_0216 0.31 -0.2
204,106 + Ga0059261_0216 0.31 +0.8
204,106 + Ga0059261_0216 0.31 +0.3
204,106 + Ga0059261_0216 0.31 -1.0
204,107 - Ga0059261_0216 0.31 -0.4
204,107 - Ga0059261_0216 0.31 -0.2
204,107 - Ga0059261_0216 0.31 -0.8
204,107 - Ga0059261_0216 0.31 +0.2
204,107 - Ga0059261_0216 0.31 -0.8
204,107 - Ga0059261_0216 0.31 -0.3
204,112 + Ga0059261_0216 0.32 -0.6
204,112 + Ga0059261_0216 0.32 +0.2
204,112 + Ga0059261_0216 0.32 +0.1
204,112 + Ga0059261_0216 0.32 -0.4
204,113 - Ga0059261_0216 0.32 -0.4
204,214 - -1.6
204,214 - Ga0059261_0216 0.53 +0.4
204,214 - Ga0059261_0216 0.53 -0.0
204,409 + -0.6
204,409 + -0.5
204,409 + +0.2
204,409 + +0.0
204,410 - +0.2
204,410 - -0.8
204,410 - -0.2
204,565 + +0.9
204,565 + +0.5
204,566 - +1.4
204,566 - -0.5
204,566 - -1.5
204,661 + -1.1
204,661 + -0.1
204,661 + -0.1
204,662 - -0.3
204,662 - +0.7
204,799 + Ga0059261_0217 0.12 -0.5
204,799 + Ga0059261_0217 0.12 +0.2
204,799 + Ga0059261_0217 0.12 -0.5
204,800 - Ga0059261_0217 0.12 -0.4
204,800 - Ga0059261_0217 0.12 +1.2
204,800 - Ga0059261_0217 0.12 +0.1
204,801 + Ga0059261_0217 0.12 +0.3
204,801 + Ga0059261_0217 0.12 -0.2
204,801 + Ga0059261_0217 0.12 +0.9
204,802 - Ga0059261_0217 0.12 +0.2
204,877 + Ga0059261_0217 0.15 -1.1
204,877 + Ga0059261_0217 0.15 -0.7
204,877 + Ga0059261_0217 0.15 -0.4
204,877 + Ga0059261_0217 0.15 -1.4
204,878 - Ga0059261_0217 0.15 -0.1
204,878 - Ga0059261_0217 0.15 -0.2
204,878 - Ga0059261_0217 0.15 +1.4
204,878 - Ga0059261_0217 0.15 +0.9
204,878 - Ga0059261_0217 0.15 -0.2
204,878 - Ga0059261_0217 0.15 +1.0

Or see this region's nucleotide sequence