Strain Fitness in Rahnella sp. WP5 around EX31_RS23700

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23695 and EX31_RS23700 are separated by 3 nucleotidesEX31_RS23700 and EX31_RS23705 overlap by 17 nucleotidesEX31_RS23705 and EX31_RS23710 are separated by 147 nucleotides EX31_RS23695: EX31_RS23695 - biotin synthase BioB, at 503,897 to 504,934 _RS23695 EX31_RS23700: EX31_RS23700 - 8-amino-7-oxononanoate synthase, at 504,938 to 506,089 _RS23700 EX31_RS23705: EX31_RS23705 - malonyl-ACP O-methyltransferase BioC, at 506,073 to 506,864 _RS23705 EX31_RS23710: EX31_RS23710 - ATP-dependent dethiobiotin synthetase BioD, at 507,012 to 507,692 _RS23710 Position (kb) 504 505 506 507Strain fitness (log2 ratio) -2 -1 0 1 2at 503.947 kb on + strandat 504.067 kb on + strand, within EX31_RS23695at 504.067 kb on + strand, within EX31_RS23695at 504.067 kb on + strand, within EX31_RS23695at 504.068 kb on - strand, within EX31_RS23695at 504.068 kb on - strand, within EX31_RS23695at 504.072 kb on - strand, within EX31_RS23695at 504.305 kb on - strand, within EX31_RS23695at 504.305 kb on - strand, within EX31_RS23695at 504.305 kb on - strand, within EX31_RS23695at 504.305 kb on - strand, within EX31_RS23695at 504.352 kb on + strand, within EX31_RS23695at 504.352 kb on + strand, within EX31_RS23695at 504.361 kb on + strand, within EX31_RS23695at 504.361 kb on + strand, within EX31_RS23695at 504.361 kb on + strand, within EX31_RS23695at 504.391 kb on - strand, within EX31_RS23695at 504.404 kb on + strand, within EX31_RS23695at 504.422 kb on - strand, within EX31_RS23695at 504.422 kb on - strand, within EX31_RS23695at 504.451 kb on + strand, within EX31_RS23695at 504.452 kb on - strand, within EX31_RS23695at 504.480 kb on + strand, within EX31_RS23695at 504.480 kb on + strand, within EX31_RS23695at 504.480 kb on + strand, within EX31_RS23695at 504.583 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.669 kb on - strand, within EX31_RS23695at 504.669 kb on - strand, within EX31_RS23695at 504.669 kb on - strand, within EX31_RS23695at 504.669 kb on - strand, within EX31_RS23695at 504.669 kb on - strand, within EX31_RS23695at 504.728 kb on - strand, within EX31_RS23695at 504.753 kb on - strand, within EX31_RS23695at 504.793 kb on + strand, within EX31_RS23695at 504.794 kb on - strand, within EX31_RS23695at 504.794 kb on - strand, within EX31_RS23695at 504.917 kb on + strandat 504.917 kb on + strandat 504.917 kb on + strandat 504.917 kb on + strandat 504.917 kb on + strandat 504.917 kb on + strandat 504.917 kb on + strandat 504.918 kb on - strandat 504.918 kb on - strandat 504.930 kb on + strandat 505.002 kb on + strandat 505.082 kb on + strand, within EX31_RS23700at 505.142 kb on + strand, within EX31_RS23700at 505.142 kb on + strand, within EX31_RS23700at 505.142 kb on + strand, within EX31_RS23700at 505.142 kb on + strand, within EX31_RS23700at 505.142 kb on + strand, within EX31_RS23700at 505.142 kb on + strand, within EX31_RS23700at 505.142 kb on + strand, within EX31_RS23700at 505.143 kb on - strand, within EX31_RS23700at 505.143 kb on - strand, within EX31_RS23700at 505.253 kb on - strand, within EX31_RS23700at 505.468 kb on - strand, within EX31_RS23700at 505.468 kb on - strand, within EX31_RS23700at 505.468 kb on - strand, within EX31_RS23700at 505.468 kb on - strand, within EX31_RS23700at 505.510 kb on + strand, within EX31_RS23700at 505.510 kb on + strand, within EX31_RS23700at 505.531 kb on + strand, within EX31_RS23700at 505.728 kb on - strand, within EX31_RS23700at 505.728 kb on - strand, within EX31_RS23700at 505.728 kb on - strand, within EX31_RS23700at 505.728 kb on - strand, within EX31_RS23700at 505.728 kb on - strand, within EX31_RS23700at 505.825 kb on + strand, within EX31_RS23700at 506.014 kb on + strandat 506.014 kb on + strandat 506.014 kb on + strandat 506.015 kb on - strandat 506.015 kb on - strandat 506.015 kb on - strandat 506.015 kb on - strandat 506.095 kb on - strandat 506.205 kb on + strand, within EX31_RS23705at 506.206 kb on - strand, within EX31_RS23705at 506.323 kb on + strand, within EX31_RS23705at 506.358 kb on + strand, within EX31_RS23705at 506.358 kb on + strand, within EX31_RS23705at 506.358 kb on + strand, within EX31_RS23705at 506.358 kb on + strand, within EX31_RS23705at 506.358 kb on + strand, within EX31_RS23705at 506.359 kb on - strand, within EX31_RS23705at 506.359 kb on - strand, within EX31_RS23705at 506.359 kb on - strand, within EX31_RS23705at 506.359 kb on - strand, within EX31_RS23705at 506.781 kb on + strand, within EX31_RS23705at 506.781 kb on + strand, within EX31_RS23705at 506.781 kb on + strand, within EX31_RS23705at 506.781 kb on + strand, within EX31_RS23705at 506.782 kb on - strand, within EX31_RS23705at 506.826 kb on + strandat 506.827 kb on - strandat 506.863 kb on - strandat 506.867 kb on - strandat 506.867 kb on - strandat 506.867 kb on - strandat 506.867 kb on - strandat 506.867 kb on - strandat 506.867 kb on - strandat 506.938 kb on - strandat 506.938 kb on - strandat 506.941 kb on - strandat 506.998 kb on + strandat 507.006 kb on + strandat 507.007 kb on - strandat 507.024 kb on + strandat 507.024 kb on + strandat 507.024 kb on + strandat 507.024 kb on + strandat 507.025 kb on - strandat 507.025 kb on - strandat 507.030 kb on - strandat 507.030 kb on - strandat 507.056 kb on + strandat 507.057 kb on - strandat 507.057 kb on - strandat 507.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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503,947 + +0.1
504,067 + EX31_RS23695 0.16 +0.3
504,067 + EX31_RS23695 0.16 +0.1
504,067 + EX31_RS23695 0.16 -1.3
504,068 - EX31_RS23695 0.16 -0.9
504,068 - EX31_RS23695 0.16 +0.3
504,072 - EX31_RS23695 0.17 +1.8
504,305 - EX31_RS23695 0.39 -1.7
504,305 - EX31_RS23695 0.39 -0.3
504,305 - EX31_RS23695 0.39 +0.0
504,305 - EX31_RS23695 0.39 +0.3
504,352 + EX31_RS23695 0.44 +0.9
504,352 + EX31_RS23695 0.44 +1.4
504,361 + EX31_RS23695 0.45 -0.2
504,361 + EX31_RS23695 0.45 -0.9
504,361 + EX31_RS23695 0.45 +0.3
504,391 - EX31_RS23695 0.48 -0.2
504,404 + EX31_RS23695 0.49 +0.7
504,422 - EX31_RS23695 0.51 -0.1
504,422 - EX31_RS23695 0.51 -0.7
504,451 + EX31_RS23695 0.53 -1.6
504,452 - EX31_RS23695 0.53 +0.7
504,480 + EX31_RS23695 0.56 -1.2
504,480 + EX31_RS23695 0.56 -0.2
504,480 + EX31_RS23695 0.56 +0.2
504,583 + EX31_RS23695 0.66 +0.3
504,668 + EX31_RS23695 0.74 +0.1
504,668 + EX31_RS23695 0.74 +0.3
504,668 + EX31_RS23695 0.74 -0.8
504,668 + EX31_RS23695 0.74 -0.3
504,668 + EX31_RS23695 0.74 +0.9
504,668 + EX31_RS23695 0.74 -0.3
504,668 + EX31_RS23695 0.74 +0.7
504,668 + EX31_RS23695 0.74 +0.9
504,668 + EX31_RS23695 0.74 -1.5
504,668 + EX31_RS23695 0.74 +0.7
504,668 + EX31_RS23695 0.74 -0.8
504,669 - EX31_RS23695 0.74 -0.5
504,669 - EX31_RS23695 0.74 -1.9
504,669 - EX31_RS23695 0.74 -0.2
504,669 - EX31_RS23695 0.74 -0.0
504,669 - EX31_RS23695 0.74 +0.4
504,728 - EX31_RS23695 0.80 -0.8
504,753 - EX31_RS23695 0.82 -0.3
504,793 + EX31_RS23695 0.86 +0.3
504,794 - EX31_RS23695 0.86 -1.9
504,794 - EX31_RS23695 0.86 +0.9
504,917 + -0.5
504,917 + -0.8
504,917 + -1.9
504,917 + +1.5
504,917 + -0.8
504,917 + +0.3
504,917 + +2.1
504,918 - -0.2
504,918 - +0.2
504,930 + -0.3
505,002 + -0.1
505,082 + EX31_RS23700 0.12 +0.1
505,142 + EX31_RS23700 0.18 +1.2
505,142 + EX31_RS23700 0.18 -0.3
505,142 + EX31_RS23700 0.18 +0.9
505,142 + EX31_RS23700 0.18 +0.1
505,142 + EX31_RS23700 0.18 +0.8
505,142 + EX31_RS23700 0.18 -0.7
505,142 + EX31_RS23700 0.18 +2.2
505,143 - EX31_RS23700 0.18 +0.7
505,143 - EX31_RS23700 0.18 -0.5
505,253 - EX31_RS23700 0.27 -0.6
505,468 - EX31_RS23700 0.46 +0.7
505,468 - EX31_RS23700 0.46 +2.1
505,468 - EX31_RS23700 0.46 +1.0
505,468 - EX31_RS23700 0.46 -0.7
505,510 + EX31_RS23700 0.50 +0.7
505,510 + EX31_RS23700 0.50 +0.9
505,531 + EX31_RS23700 0.51 -0.7
505,728 - EX31_RS23700 0.69 +0.7
505,728 - EX31_RS23700 0.69 +1.2
505,728 - EX31_RS23700 0.69 -1.7
505,728 - EX31_RS23700 0.69 +2.0
505,728 - EX31_RS23700 0.69 +2.2
505,825 + EX31_RS23700 0.77 +0.2
506,014 + +1.1
506,014 + -2.2
506,014 + +0.9
506,015 - +0.9
506,015 - +1.5
506,015 - +1.8
506,015 - +1.7
506,095 - +0.2
506,205 + EX31_RS23705 0.17 +0.7
506,206 - EX31_RS23705 0.17 +1.2
506,323 + EX31_RS23705 0.32 +0.2
506,358 + EX31_RS23705 0.36 +0.2
506,358 + EX31_RS23705 0.36 +1.2
506,358 + EX31_RS23705 0.36 -1.7
506,358 + EX31_RS23705 0.36 +0.5
506,358 + EX31_RS23705 0.36 +1.9
506,359 - EX31_RS23705 0.36 +0.2
506,359 - EX31_RS23705 0.36 +1.1
506,359 - EX31_RS23705 0.36 +1.5
506,359 - EX31_RS23705 0.36 +0.7
506,781 + EX31_RS23705 0.89 +0.5
506,781 + EX31_RS23705 0.89 -0.3
506,781 + EX31_RS23705 0.89 -0.2
506,781 + EX31_RS23705 0.89 +0.3
506,782 - EX31_RS23705 0.90 +1.8
506,826 + -0.1
506,827 - -0.2
506,863 - +1.1
506,867 - +2.1
506,867 - -0.7
506,867 - +1.9
506,867 - +0.1
506,867 - +1.1
506,867 - +1.7
506,938 - +0.7
506,938 - +0.5
506,941 - -1.0
506,998 + +1.1
507,006 + -0.3
507,007 - +0.4
507,024 + -1.2
507,024 + -0.5
507,024 + +0.3
507,024 + +0.7
507,025 - -0.7
507,025 - -0.7
507,030 - +0.5
507,030 - -0.2
507,056 + -0.3
507,057 - +1.7
507,057 - -0.1
507,057 - -0.6

Or see this region's nucleotide sequence