Strain Fitness in Rahnella sp. WP5 around EX31_RS21410

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS21405 and EX31_RS21410 are separated by 72 nucleotidesEX31_RS21410 and EX31_RS21415 are separated by 129 nucleotides EX31_RS21405: EX31_RS21405 - erythrose-4-phosphate dehydrogenase, at 20,947 to 21,963 _RS21405 EX31_RS21410: EX31_RS21410 - phosphoglycerate kinase, at 22,036 to 23,199 _RS21410 EX31_RS21415: EX31_RS21415 - class II fructose-bisphosphate aldolase, at 23,329 to 24,408 _RS21415 Position (kb) 22 23 24Strain fitness (log2 ratio) -2 -1 0 1 2at 21.090 kb on + strand, within EX31_RS21405at 21.090 kb on + strand, within EX31_RS21405at 21.090 kb on + strand, within EX31_RS21405at 21.090 kb on + strand, within EX31_RS21405at 21.090 kb on + strand, within EX31_RS21405at 21.091 kb on - strand, within EX31_RS21405at 21.091 kb on - strand, within EX31_RS21405at 21.091 kb on - strand, within EX31_RS21405at 21.094 kb on + strand, within EX31_RS21405at 21.095 kb on - strand, within EX31_RS21405at 21.151 kb on + strand, within EX31_RS21405at 21.152 kb on - strand, within EX31_RS21405at 21.176 kb on + strand, within EX31_RS21405at 21.176 kb on + strand, within EX31_RS21405at 21.176 kb on + strand, within EX31_RS21405at 21.177 kb on - strand, within EX31_RS21405at 21.177 kb on - strand, within EX31_RS21405at 21.352 kb on + strand, within EX31_RS21405at 21.352 kb on + strand, within EX31_RS21405at 21.352 kb on + strand, within EX31_RS21405at 21.353 kb on - strand, within EX31_RS21405at 21.423 kb on + strand, within EX31_RS21405at 21.423 kb on + strand, within EX31_RS21405at 21.423 kb on + strand, within EX31_RS21405at 21.423 kb on + strand, within EX31_RS21405at 21.423 kb on + strand, within EX31_RS21405at 21.423 kb on + strand, within EX31_RS21405at 21.423 kb on + strand, within EX31_RS21405at 21.423 kb on + strand, within EX31_RS21405at 21.423 kb on + strand, within EX31_RS21405at 21.423 kb on + strand, within EX31_RS21405at 21.423 kb on + strand, within EX31_RS21405at 21.423 kb on + strand, within EX31_RS21405at 21.423 kb on + strand, within EX31_RS21405at 21.423 kb on + strand, within EX31_RS21405at 21.423 kb on + strand, within EX31_RS21405at 21.424 kb on - strand, within EX31_RS21405at 21.424 kb on - strand, within EX31_RS21405at 21.424 kb on - strand, within EX31_RS21405at 21.424 kb on - strand, within EX31_RS21405at 21.424 kb on - strand, within EX31_RS21405at 21.424 kb on - strand, within EX31_RS21405at 21.424 kb on - strand, within EX31_RS21405at 21.424 kb on - strand, within EX31_RS21405at 21.424 kb on - strand, within EX31_RS21405at 21.427 kb on - strand, within EX31_RS21405at 21.427 kb on - strand, within EX31_RS21405at 21.526 kb on + strand, within EX31_RS21405at 21.526 kb on + strand, within EX31_RS21405at 21.526 kb on + strand, within EX31_RS21405at 21.527 kb on - strand, within EX31_RS21405at 21.527 kb on - strand, within EX31_RS21405at 21.527 kb on - strand, within EX31_RS21405at 21.539 kb on + strand, within EX31_RS21405at 21.583 kb on - strand, within EX31_RS21405at 21.692 kb on + strand, within EX31_RS21405at 21.692 kb on + strand, within EX31_RS21405at 21.692 kb on + strand, within EX31_RS21405at 21.692 kb on + strand, within EX31_RS21405at 21.693 kb on - strand, within EX31_RS21405at 21.693 kb on - strand, within EX31_RS21405at 21.693 kb on - strand, within EX31_RS21405at 21.716 kb on + strand, within EX31_RS21405at 21.716 kb on + strand, within EX31_RS21405at 21.768 kb on + strand, within EX31_RS21405at 21.768 kb on + strand, within EX31_RS21405at 21.778 kb on + strand, within EX31_RS21405at 21.780 kb on + strand, within EX31_RS21405at 21.788 kb on + strand, within EX31_RS21405at 21.788 kb on + strand, within EX31_RS21405at 21.788 kb on + strand, within EX31_RS21405at 21.794 kb on + strand, within EX31_RS21405at 21.794 kb on + strand, within EX31_RS21405at 21.794 kb on + strand, within EX31_RS21405at 21.836 kb on + strand, within EX31_RS21405at 21.836 kb on + strand, within EX31_RS21405at 21.836 kb on + strand, within EX31_RS21405at 21.836 kb on + strand, within EX31_RS21405at 21.836 kb on + strand, within EX31_RS21405at 21.857 kb on + strand, within EX31_RS21405at 21.857 kb on + strand, within EX31_RS21405at 21.930 kb on + strandat 21.930 kb on + strandat 21.930 kb on + strandat 22.009 kb on + strandat 22.009 kb on + strandat 22.009 kb on + strandat 23.190 kb on + strandat 23.190 kb on + strandat 23.197 kb on + strandat 23.197 kb on + strandat 23.197 kb on + strandat 23.220 kb on + strandat 23.220 kb on + strandat 23.220 kb on + strandat 23.220 kb on + strandat 23.278 kb on + strandat 23.278 kb on + strandat 23.278 kb on + strandat 23.300 kb on + strandat 23.300 kb on + strandat 23.313 kb on + strandat 23.313 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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21,090 + EX31_RS21405 0.14 -0.5
21,090 + EX31_RS21405 0.14 -0.9
21,090 + EX31_RS21405 0.14 -2.0
21,090 + EX31_RS21405 0.14 +0.7
21,090 + EX31_RS21405 0.14 -0.9
21,091 - EX31_RS21405 0.14 +0.4
21,091 - EX31_RS21405 0.14 +0.9
21,091 - EX31_RS21405 0.14 -1.1
21,094 + EX31_RS21405 0.14 -0.6
21,095 - EX31_RS21405 0.15 -1.3
21,151 + EX31_RS21405 0.20 +0.5
21,152 - EX31_RS21405 0.20 +0.1
21,176 + EX31_RS21405 0.23 -0.0
21,176 + EX31_RS21405 0.23 +0.3
21,176 + EX31_RS21405 0.23 -0.0
21,177 - EX31_RS21405 0.23 -0.2
21,177 - EX31_RS21405 0.23 -1.1
21,352 + EX31_RS21405 0.40 -0.5
21,352 + EX31_RS21405 0.40 -2.3
21,352 + EX31_RS21405 0.40 +0.6
21,353 - EX31_RS21405 0.40 +0.4
21,423 + EX31_RS21405 0.47 -0.2
21,423 + EX31_RS21405 0.47 +0.6
21,423 + EX31_RS21405 0.47 -0.8
21,423 + EX31_RS21405 0.47 +0.9
21,423 + EX31_RS21405 0.47 -0.1
21,423 + EX31_RS21405 0.47 -0.1
21,423 + EX31_RS21405 0.47 +0.4
21,423 + EX31_RS21405 0.47 -0.2
21,423 + EX31_RS21405 0.47 +0.4
21,423 + EX31_RS21405 0.47 -0.2
21,423 + EX31_RS21405 0.47 +0.3
21,423 + EX31_RS21405 0.47 -0.0
21,423 + EX31_RS21405 0.47 +0.2
21,423 + EX31_RS21405 0.47 -1.1
21,423 + EX31_RS21405 0.47 -0.1
21,424 - EX31_RS21405 0.47 -0.9
21,424 - EX31_RS21405 0.47 -1.5
21,424 - EX31_RS21405 0.47 -1.3
21,424 - EX31_RS21405 0.47 +0.7
21,424 - EX31_RS21405 0.47 -0.1
21,424 - EX31_RS21405 0.47 -1.0
21,424 - EX31_RS21405 0.47 -1.7
21,424 - EX31_RS21405 0.47 -1.1
21,424 - EX31_RS21405 0.47 +1.5
21,427 - EX31_RS21405 0.47 +0.1
21,427 - EX31_RS21405 0.47 +0.7
21,526 + EX31_RS21405 0.57 -1.1
21,526 + EX31_RS21405 0.57 +2.3
21,526 + EX31_RS21405 0.57 +0.7
21,527 - EX31_RS21405 0.57 -0.3
21,527 - EX31_RS21405 0.57 -1.0
21,527 - EX31_RS21405 0.57 -0.7
21,539 + EX31_RS21405 0.58 -0.6
21,583 - EX31_RS21405 0.63 +0.1
21,692 + EX31_RS21405 0.73 -0.1
21,692 + EX31_RS21405 0.73 -0.7
21,692 + EX31_RS21405 0.73 +1.0
21,692 + EX31_RS21405 0.73 +0.7
21,693 - EX31_RS21405 0.73 -0.5
21,693 - EX31_RS21405 0.73 -0.2
21,693 - EX31_RS21405 0.73 -1.7
21,716 + EX31_RS21405 0.76 -0.1
21,716 + EX31_RS21405 0.76 +0.2
21,768 + EX31_RS21405 0.81 -0.1
21,768 + EX31_RS21405 0.81 +0.9
21,778 + EX31_RS21405 0.82 -0.5
21,780 + EX31_RS21405 0.82 -0.8
21,788 + EX31_RS21405 0.83 +0.4
21,788 + EX31_RS21405 0.83 -0.2
21,788 + EX31_RS21405 0.83 +0.3
21,794 + EX31_RS21405 0.83 -0.7
21,794 + EX31_RS21405 0.83 -1.1
21,794 + EX31_RS21405 0.83 +1.1
21,836 + EX31_RS21405 0.87 +0.1
21,836 + EX31_RS21405 0.87 -0.4
21,836 + EX31_RS21405 0.87 +1.2
21,836 + EX31_RS21405 0.87 +0.3
21,836 + EX31_RS21405 0.87 +1.3
21,857 + EX31_RS21405 0.89 +0.9
21,857 + EX31_RS21405 0.89 +0.8
21,930 + +0.6
21,930 + +0.7
21,930 + -0.7
22,009 + -0.5
22,009 + -0.5
22,009 + -0.7
23,190 + -0.1
23,190 + -0.7
23,197 + -1.0
23,197 + +0.2
23,197 + -1.0
23,220 + +1.4
23,220 + -1.6
23,220 + -2.4
23,220 + -1.4
23,278 + -0.5
23,278 + -1.6
23,278 + -0.4
23,300 + +0.7
23,300 + -1.3
23,313 + -1.9
23,313 + -1.8

Or see this region's nucleotide sequence