Strain Fitness in Rahnella sp. WP5 around EX31_RS18710

Experiment: D-Mannitol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS18705 and EX31_RS18710 are separated by 199 nucleotidesEX31_RS18710 and EX31_RS18715 are separated by 43 nucleotides EX31_RS18705: EX31_RS18705 - YbfB/YjiJ family MFS transporter, at 321,576 to 322,703 _RS18705 EX31_RS18710: EX31_RS18710 - LysR family transcriptional regulator, at 322,903 to 323,832 _RS18710 EX31_RS18715: EX31_RS18715 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 323,876 to 325,000 _RS18715 Position (kb) 322 323 324Strain fitness (log2 ratio) -2 -1 0 1 2 3at 322.038 kb on + strand, within EX31_RS18705at 322.059 kb on - strand, within EX31_RS18705at 322.059 kb on - strand, within EX31_RS18705at 322.059 kb on - strand, within EX31_RS18705at 322.059 kb on - strand, within EX31_RS18705at 322.059 kb on - strand, within EX31_RS18705at 322.060 kb on + strand, within EX31_RS18705at 322.060 kb on + strand, within EX31_RS18705at 322.061 kb on - strand, within EX31_RS18705at 322.061 kb on - strand, within EX31_RS18705at 322.061 kb on - strand, within EX31_RS18705at 322.061 kb on - strand, within EX31_RS18705at 322.061 kb on - strand, within EX31_RS18705at 322.061 kb on - strand, within EX31_RS18705at 322.061 kb on - strand, within EX31_RS18705at 322.081 kb on + strand, within EX31_RS18705at 322.081 kb on + strand, within EX31_RS18705at 322.082 kb on - strand, within EX31_RS18705at 322.082 kb on - strand, within EX31_RS18705at 322.082 kb on - strand, within EX31_RS18705at 322.082 kb on - strand, within EX31_RS18705at 322.181 kb on + strand, within EX31_RS18705at 322.182 kb on - strand, within EX31_RS18705at 322.182 kb on - strand, within EX31_RS18705at 322.182 kb on - strand, within EX31_RS18705at 322.182 kb on - strand, within EX31_RS18705at 322.182 kb on - strand, within EX31_RS18705at 322.182 kb on - strand, within EX31_RS18705at 322.214 kb on - strand, within EX31_RS18705at 322.214 kb on - strand, within EX31_RS18705at 322.337 kb on - strand, within EX31_RS18705at 322.418 kb on + strand, within EX31_RS18705at 322.418 kb on + strand, within EX31_RS18705at 322.418 kb on + strand, within EX31_RS18705at 322.418 kb on + strand, within EX31_RS18705at 322.419 kb on - strand, within EX31_RS18705at 322.419 kb on - strand, within EX31_RS18705at 322.419 kb on - strand, within EX31_RS18705at 322.419 kb on - strand, within EX31_RS18705at 322.555 kb on + strand, within EX31_RS18705at 322.556 kb on - strand, within EX31_RS18705at 322.556 kb on - strand, within EX31_RS18705at 322.608 kb on + strandat 322.608 kb on + strandat 322.608 kb on + strandat 322.608 kb on + strandat 322.609 kb on - strandat 322.609 kb on - strandat 322.609 kb on - strandat 322.609 kb on - strandat 322.609 kb on - strandat 322.609 kb on - strandat 322.632 kb on - strandat 322.737 kb on - strandat 322.738 kb on - strandat 322.738 kb on - strandat 322.760 kb on - strandat 322.805 kb on + strandat 322.832 kb on + strandat 322.838 kb on + strandat 322.860 kb on + strandat 323.101 kb on + strand, within EX31_RS18710at 323.101 kb on + strand, within EX31_RS18710at 323.101 kb on + strand, within EX31_RS18710at 323.102 kb on - strand, within EX31_RS18710at 323.233 kb on + strand, within EX31_RS18710at 323.233 kb on + strand, within EX31_RS18710at 323.233 kb on + strand, within EX31_RS18710at 323.233 kb on + strand, within EX31_RS18710at 323.233 kb on + strand, within EX31_RS18710at 323.358 kb on + strand, within EX31_RS18710at 323.358 kb on + strand, within EX31_RS18710at 323.370 kb on + strand, within EX31_RS18710at 323.370 kb on + strand, within EX31_RS18710at 323.370 kb on + strand, within EX31_RS18710at 323.370 kb on + strand, within EX31_RS18710at 323.370 kb on + strand, within EX31_RS18710at 323.370 kb on + strand, within EX31_RS18710at 323.370 kb on + strand, within EX31_RS18710at 323.694 kb on + strand, within EX31_RS18710at 323.694 kb on + strand, within EX31_RS18710at 323.827 kb on + strandat 323.827 kb on + strandat 323.827 kb on + strandat 323.827 kb on + strandat 323.827 kb on + strandat 323.827 kb on + strandat 323.827 kb on + strandat 323.828 kb on - strandat 323.828 kb on - strandat 323.830 kb on + strandat 323.830 kb on + strandat 323.831 kb on - strandat 323.835 kb on + strandat 323.835 kb on + strandat 323.836 kb on - strandat 323.847 kb on - strandat 323.850 kb on + strandat 323.850 kb on + strandat 323.850 kb on + strandat 323.850 kb on + strandat 323.851 kb on - strandat 323.851 kb on - strandat 323.870 kb on + strandat 323.983 kb on + strandat 324.007 kb on + strand, within EX31_RS18715at 324.007 kb on + strand, within EX31_RS18715at 324.017 kb on + strand, within EX31_RS18715at 324.017 kb on + strand, within EX31_RS18715at 324.017 kb on + strand, within EX31_RS18715at 324.017 kb on + strand, within EX31_RS18715at 324.017 kb on + strand, within EX31_RS18715at 324.017 kb on + strand, within EX31_RS18715at 324.017 kb on + strand, within EX31_RS18715at 324.017 kb on + strand, within EX31_RS18715at 324.018 kb on - strand, within EX31_RS18715at 324.146 kb on + strand, within EX31_RS18715at 324.146 kb on + strand, within EX31_RS18715at 324.146 kb on + strand, within EX31_RS18715at 324.147 kb on - strand, within EX31_RS18715at 324.169 kb on + strand, within EX31_RS18715at 324.169 kb on + strand, within EX31_RS18715at 324.169 kb on + strand, within EX31_RS18715at 324.169 kb on + strand, within EX31_RS18715at 324.169 kb on + strand, within EX31_RS18715at 324.169 kb on + strand, within EX31_RS18715at 324.170 kb on - strand, within EX31_RS18715at 324.227 kb on - strand, within EX31_RS18715at 324.227 kb on - strand, within EX31_RS18715at 324.287 kb on + strand, within EX31_RS18715at 324.287 kb on + strand, within EX31_RS18715at 324.287 kb on + strand, within EX31_RS18715at 324.287 kb on + strand, within EX31_RS18715at 324.287 kb on + strand, within EX31_RS18715at 324.288 kb on - strand, within EX31_RS18715at 324.288 kb on - strand, within EX31_RS18715at 324.288 kb on - strand, within EX31_RS18715at 324.314 kb on + strand, within EX31_RS18715at 324.673 kb on + strand, within EX31_RS18715at 324.673 kb on + strand, within EX31_RS18715at 324.674 kb on - strand, within EX31_RS18715at 324.674 kb on - strand, within EX31_RS18715

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
remove
322,038 + EX31_RS18705 0.41 -0.9
322,059 - EX31_RS18705 0.43 -0.9
322,059 - EX31_RS18705 0.43 +0.9
322,059 - EX31_RS18705 0.43 -0.6
322,059 - EX31_RS18705 0.43 -1.4
322,059 - EX31_RS18705 0.43 +1.5
322,060 + EX31_RS18705 0.43 +0.8
322,060 + EX31_RS18705 0.43 -1.7
322,061 - EX31_RS18705 0.43 -0.4
322,061 - EX31_RS18705 0.43 +1.1
322,061 - EX31_RS18705 0.43 +1.4
322,061 - EX31_RS18705 0.43 +1.5
322,061 - EX31_RS18705 0.43 +0.0
322,061 - EX31_RS18705 0.43 -2.3
322,061 - EX31_RS18705 0.43 +0.1
322,081 + EX31_RS18705 0.45 +0.6
322,081 + EX31_RS18705 0.45 +2.6
322,082 - EX31_RS18705 0.45 +1.6
322,082 - EX31_RS18705 0.45 +0.6
322,082 - EX31_RS18705 0.45 +0.6
322,082 - EX31_RS18705 0.45 -0.0
322,181 + EX31_RS18705 0.54 +0.4
322,182 - EX31_RS18705 0.54 +0.9
322,182 - EX31_RS18705 0.54 +2.6
322,182 - EX31_RS18705 0.54 -0.5
322,182 - EX31_RS18705 0.54 +0.1
322,182 - EX31_RS18705 0.54 -0.1
322,182 - EX31_RS18705 0.54 +1.4
322,214 - EX31_RS18705 0.57 -1.2
322,214 - EX31_RS18705 0.57 +1.1
322,337 - EX31_RS18705 0.67 -1.4
322,418 + EX31_RS18705 0.75 +0.2
322,418 + EX31_RS18705 0.75 +0.4
322,418 + EX31_RS18705 0.75 +0.4
322,418 + EX31_RS18705 0.75 +0.6
322,419 - EX31_RS18705 0.75 -0.9
322,419 - EX31_RS18705 0.75 +0.6
322,419 - EX31_RS18705 0.75 +0.5
322,419 - EX31_RS18705 0.75 -0.4
322,555 + EX31_RS18705 0.87 +1.0
322,556 - EX31_RS18705 0.87 +0.9
322,556 - EX31_RS18705 0.87 -1.7
322,608 + +0.6
322,608 + +0.9
322,608 + +1.2
322,608 + -1.5
322,609 - +0.4
322,609 - +1.0
322,609 - -0.5
322,609 - -0.8
322,609 - -0.1
322,609 - +0.1
322,632 - +1.0
322,737 - -0.0
322,738 - +0.1
322,738 - -1.6
322,760 - +1.8
322,805 + -0.7
322,832 + -0.1
322,838 + -1.4
322,860 + +0.5
323,101 + EX31_RS18710 0.21 +0.3
323,101 + EX31_RS18710 0.21 -1.6
323,101 + EX31_RS18710 0.21 -0.2
323,102 - EX31_RS18710 0.21 -1.7
323,233 + EX31_RS18710 0.35 -1.7
323,233 + EX31_RS18710 0.35 -1.1
323,233 + EX31_RS18710 0.35 -0.4
323,233 + EX31_RS18710 0.35 -0.2
323,233 + EX31_RS18710 0.35 +2.0
323,358 + EX31_RS18710 0.49 -0.6
323,358 + EX31_RS18710 0.49 +0.4
323,370 + EX31_RS18710 0.50 +0.5
323,370 + EX31_RS18710 0.50 -0.1
323,370 + EX31_RS18710 0.50 -0.8
323,370 + EX31_RS18710 0.50 -0.4
323,370 + EX31_RS18710 0.50 -1.1
323,370 + EX31_RS18710 0.50 +0.4
323,370 + EX31_RS18710 0.50 -0.1
323,694 + EX31_RS18710 0.85 +0.4
323,694 + EX31_RS18710 0.85 -0.3
323,827 + -1.1
323,827 + +1.2
323,827 + -0.4
323,827 + +0.3
323,827 + +0.1
323,827 + -0.1
323,827 + +0.5
323,828 - +0.6
323,828 - -0.7
323,830 + +1.1
323,830 + -0.5
323,831 - -0.2
323,835 + -2.2
323,835 + +0.2
323,836 - +1.5
323,847 - -0.9
323,850 + -0.4
323,850 + -0.7
323,850 + -0.1
323,850 + -0.5
323,851 - -0.4
323,851 - +1.1
323,870 + -1.4
323,983 + -1.7
324,007 + EX31_RS18715 0.12 -1.4
324,007 + EX31_RS18715 0.12 -0.4
324,017 + EX31_RS18715 0.13 -0.5
324,017 + EX31_RS18715 0.13 -1.1
324,017 + EX31_RS18715 0.13 -0.7
324,017 + EX31_RS18715 0.13 +0.1
324,017 + EX31_RS18715 0.13 +1.8
324,017 + EX31_RS18715 0.13 -1.0
324,017 + EX31_RS18715 0.13 +1.2
324,017 + EX31_RS18715 0.13 +0.6
324,018 - EX31_RS18715 0.13 +0.7
324,146 + EX31_RS18715 0.24 +0.1
324,146 + EX31_RS18715 0.24 +0.4
324,146 + EX31_RS18715 0.24 +0.2
324,147 - EX31_RS18715 0.24 +0.3
324,169 + EX31_RS18715 0.26 +2.8
324,169 + EX31_RS18715 0.26 -1.4
324,169 + EX31_RS18715 0.26 -0.4
324,169 + EX31_RS18715 0.26 -1.7
324,169 + EX31_RS18715 0.26 -0.6
324,169 + EX31_RS18715 0.26 +1.9
324,170 - EX31_RS18715 0.26 -0.4
324,227 - EX31_RS18715 0.31 -0.4
324,227 - EX31_RS18715 0.31 -1.1
324,287 + EX31_RS18715 0.37 +1.4
324,287 + EX31_RS18715 0.37 -0.3
324,287 + EX31_RS18715 0.37 +0.8
324,287 + EX31_RS18715 0.37 -0.9
324,287 + EX31_RS18715 0.37 +0.2
324,288 - EX31_RS18715 0.37 +1.6
324,288 - EX31_RS18715 0.37 +1.0
324,288 - EX31_RS18715 0.37 +0.5
324,314 + EX31_RS18715 0.39 +0.2
324,673 + EX31_RS18715 0.71 -0.6
324,673 + EX31_RS18715 0.71 +0.4
324,674 - EX31_RS18715 0.71 -0.4
324,674 - EX31_RS18715 0.71 -0.0

Or see this region's nucleotide sequence