Strain Fitness in Rahnella sp. WP5 around EX31_RS18120

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18110 and EX31_RS18115 are separated by 11 nucleotidesEX31_RS18115 and EX31_RS18120 overlap by 4 nucleotidesEX31_RS18120 and EX31_RS18125 are separated by 75 nucleotides EX31_RS18110: EX31_RS18110 - FMNH2-dependent alkanesulfonate monooxygenase, at 183,558 to 184,712 _RS18110 EX31_RS18115: EX31_RS18115 - aliphatic sulfonate ABC transporter permease SsuC, at 184,724 to 185,515 _RS18115 EX31_RS18120: EX31_RS18120 - aliphatic sulfonates ABC transporter ATP-binding protein, at 185,512 to 186,294 _RS18120 EX31_RS18125: EX31_RS18125 - aminopeptidase N, at 186,370 to 188,985 _RS18125 Position (kb) 185 186 187Strain fitness (log2 ratio) -2 -1 0 1 2at 184.512 kb on + strand, within EX31_RS18110at 184.512 kb on + strand, within EX31_RS18110at 184.513 kb on - strand, within EX31_RS18110at 184.532 kb on + strand, within EX31_RS18110at 184.533 kb on - strand, within EX31_RS18110at 184.538 kb on + strand, within EX31_RS18110at 184.572 kb on + strand, within EX31_RS18110at 184.631 kb on + strandat 184.632 kb on - strandat 184.916 kb on - strand, within EX31_RS18115at 185.138 kb on + strand, within EX31_RS18115at 185.150 kb on + strand, within EX31_RS18115at 185.227 kb on + strand, within EX31_RS18115at 185.238 kb on + strand, within EX31_RS18115at 185.238 kb on + strand, within EX31_RS18115at 185.238 kb on + strand, within EX31_RS18115at 185.238 kb on + strand, within EX31_RS18115at 185.239 kb on - strand, within EX31_RS18115at 185.263 kb on + strand, within EX31_RS18115at 185.263 kb on + strand, within EX31_RS18115at 185.349 kb on - strand, within EX31_RS18115at 185.412 kb on - strand, within EX31_RS18115at 185.667 kb on + strand, within EX31_RS18120at 185.667 kb on + strand, within EX31_RS18120at 185.811 kb on + strand, within EX31_RS18120at 185.811 kb on + strand, within EX31_RS18120at 185.955 kb on - strand, within EX31_RS18120at 185.955 kb on - strand, within EX31_RS18120at 186.158 kb on + strand, within EX31_RS18120at 186.299 kb on + strandat 186.299 kb on + strandat 186.299 kb on + strandat 186.299 kb on + strandat 186.299 kb on + strandat 186.300 kb on - strandat 186.300 kb on - strandat 186.312 kb on + strandat 186.312 kb on + strandat 186.313 kb on - strandat 186.371 kb on + strandat 186.372 kb on - strandat 186.380 kb on - strandat 186.380 kb on - strandat 186.480 kb on - strandat 186.511 kb on - strandat 186.703 kb on + strand, within EX31_RS18125at 186.703 kb on + strand, within EX31_RS18125at 186.703 kb on + strand, within EX31_RS18125at 186.744 kb on + strand, within EX31_RS18125at 186.745 kb on - strand, within EX31_RS18125at 186.745 kb on - strand, within EX31_RS18125at 186.745 kb on - strand, within EX31_RS18125at 186.862 kb on - strand, within EX31_RS18125at 186.927 kb on - strand, within EX31_RS18125at 186.927 kb on - strand, within EX31_RS18125at 186.942 kb on + strand, within EX31_RS18125at 186.984 kb on - strand, within EX31_RS18125at 187.008 kb on - strand, within EX31_RS18125at 187.095 kb on + strand, within EX31_RS18125at 187.096 kb on - strand, within EX31_RS18125at 187.246 kb on + strand, within EX31_RS18125at 187.262 kb on + strand, within EX31_RS18125at 187.262 kb on + strand, within EX31_RS18125at 187.263 kb on - strand, within EX31_RS18125at 187.263 kb on - strand, within EX31_RS18125

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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184,512 + EX31_RS18110 0.83 +0.0
184,512 + EX31_RS18110 0.83 +0.0
184,513 - EX31_RS18110 0.83 +0.6
184,532 + EX31_RS18110 0.84 -0.4
184,533 - EX31_RS18110 0.84 -0.7
184,538 + EX31_RS18110 0.85 -0.2
184,572 + EX31_RS18110 0.88 -0.2
184,631 + -0.4
184,632 - -1.9
184,916 - EX31_RS18115 0.24 -0.4
185,138 + EX31_RS18115 0.52 +0.0
185,150 + EX31_RS18115 0.54 -1.1
185,227 + EX31_RS18115 0.64 -2.2
185,238 + EX31_RS18115 0.65 -1.2
185,238 + EX31_RS18115 0.65 -0.4
185,238 + EX31_RS18115 0.65 -0.3
185,238 + EX31_RS18115 0.65 -0.2
185,239 - EX31_RS18115 0.65 -1.5
185,263 + EX31_RS18115 0.68 -0.1
185,263 + EX31_RS18115 0.68 -1.0
185,349 - EX31_RS18115 0.79 -1.0
185,412 - EX31_RS18115 0.87 -0.7
185,667 + EX31_RS18120 0.20 -2.4
185,667 + EX31_RS18120 0.20 -0.4
185,811 + EX31_RS18120 0.38 -0.3
185,811 + EX31_RS18120 0.38 +1.0
185,955 - EX31_RS18120 0.57 +0.6
185,955 - EX31_RS18120 0.57 -2.1
186,158 + EX31_RS18120 0.83 -1.1
186,299 + +2.2
186,299 + +0.6
186,299 + +0.1
186,299 + -1.4
186,299 + +0.6
186,300 - +0.3
186,300 - +0.6
186,312 + +0.6
186,312 + -1.7
186,313 - +0.4
186,371 + +0.0
186,372 - +0.5
186,380 - +0.6
186,380 - +0.3
186,480 - +0.7
186,511 - +1.0
186,703 + EX31_RS18125 0.13 +0.6
186,703 + EX31_RS18125 0.13 +1.6
186,703 + EX31_RS18125 0.13 -0.4
186,744 + EX31_RS18125 0.14 +0.0
186,745 - EX31_RS18125 0.14 +0.4
186,745 - EX31_RS18125 0.14 +0.6
186,745 - EX31_RS18125 0.14 +2.6
186,862 - EX31_RS18125 0.19 -0.3
186,927 - EX31_RS18125 0.21 -0.5
186,927 - EX31_RS18125 0.21 +0.8
186,942 + EX31_RS18125 0.22 -1.7
186,984 - EX31_RS18125 0.23 +1.2
187,008 - EX31_RS18125 0.24 +0.6
187,095 + EX31_RS18125 0.28 -0.8
187,096 - EX31_RS18125 0.28 -1.1
187,246 + EX31_RS18125 0.33 +0.6
187,262 + EX31_RS18125 0.34 -0.6
187,262 + EX31_RS18125 0.34 -1.0
187,263 - EX31_RS18125 0.34 -0.1
187,263 - EX31_RS18125 0.34 -1.3

Or see this region's nucleotide sequence