Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS15850 and EX31_RS15855 are separated by 18 nucleotides EX31_RS15855 and EX31_RS15860 are separated by 11 nucleotides EX31_RS15860 and EX31_RS15865 are separated by 164 nucleotides
EX31_RS15850: EX31_RS15850 - D-tyrosyl-tRNA(Tyr) deacylase, at 25,582 to 26,019
_RS15850
EX31_RS15855: EX31_RS15855 - virulence factor BrkB family protein, at 26,038 to 26,907
_RS15855
EX31_RS15860: EX31_RS15860 - glucose-1-phosphatase, at 26,919 to 27,506
_RS15860
EX31_RS15865: EX31_RS15865 - ribosome-dependent GTPase TypA, at 27,671 to 29,494
_RS15865
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 25.952 kb on - strand, within EX31_RS15850 at 25.952 kb on - strand, within EX31_RS15850 at 25.952 kb on - strand, within EX31_RS15850 at 25.952 kb on - strand, within EX31_RS15850 at 25.996 kb on + strand at 26.008 kb on + strand at 26.019 kb on + strand at 26.019 kb on + strand at 26.019 kb on + strand at 26.019 kb on + strand at 26.020 kb on - strand at 26.020 kb on - strand at 26.020 kb on - strand at 26.020 kb on - strand at 26.020 kb on - strand at 26.040 kb on - strand at 26.052 kb on + strand at 26.052 kb on + strand at 26.052 kb on + strand at 26.052 kb on + strand at 26.053 kb on - strand at 26.053 kb on - strand at 26.053 kb on - strand at 26.053 kb on - strand at 26.053 kb on - strand at 26.053 kb on - strand at 26.088 kb on - strand at 26.130 kb on + strand, within EX31_RS15855 at 26.130 kb on + strand, within EX31_RS15855 at 26.130 kb on + strand, within EX31_RS15855 at 26.130 kb on + strand, within EX31_RS15855 at 26.130 kb on + strand, within EX31_RS15855 at 26.131 kb on - strand, within EX31_RS15855 at 26.131 kb on - strand, within EX31_RS15855 at 26.131 kb on - strand, within EX31_RS15855 at 26.131 kb on - strand, within EX31_RS15855 at 26.131 kb on - strand, within EX31_RS15855 at 26.144 kb on + strand, within EX31_RS15855 at 26.144 kb on + strand, within EX31_RS15855 at 26.144 kb on + strand, within EX31_RS15855 at 26.144 kb on + strand, within EX31_RS15855 at 26.144 kb on + strand, within EX31_RS15855 at 26.145 kb on - strand, within EX31_RS15855 at 26.145 kb on - strand, within EX31_RS15855 at 26.179 kb on + strand, within EX31_RS15855 at 26.180 kb on - strand, within EX31_RS15855 at 26.186 kb on + strand, within EX31_RS15855 at 26.186 kb on + strand, within EX31_RS15855 at 26.187 kb on - strand, within EX31_RS15855 at 26.187 kb on - strand, within EX31_RS15855 at 26.187 kb on - strand, within EX31_RS15855 at 26.198 kb on + strand, within EX31_RS15855 at 26.198 kb on + strand, within EX31_RS15855 at 26.198 kb on + strand, within EX31_RS15855 at 26.198 kb on + strand, within EX31_RS15855 at 26.198 kb on + strand, within EX31_RS15855 at 26.199 kb on - strand, within EX31_RS15855 at 26.199 kb on - strand, within EX31_RS15855 at 26.199 kb on - strand, within EX31_RS15855 at 26.219 kb on + strand, within EX31_RS15855 at 26.219 kb on + strand, within EX31_RS15855 at 26.219 kb on + strand, within EX31_RS15855 at 26.219 kb on + strand, within EX31_RS15855 at 26.219 kb on + strand, within EX31_RS15855 at 26.219 kb on + strand, within EX31_RS15855 at 26.219 kb on + strand, within EX31_RS15855 at 26.219 kb on + strand, within EX31_RS15855 at 26.220 kb on - strand, within EX31_RS15855 at 26.220 kb on - strand, within EX31_RS15855 at 26.220 kb on - strand, within EX31_RS15855 at 26.220 kb on - strand, within EX31_RS15855 at 26.220 kb on - strand, within EX31_RS15855 at 26.220 kb on - strand, within EX31_RS15855 at 26.220 kb on - strand, within EX31_RS15855 at 26.220 kb on - strand, within EX31_RS15855 at 26.220 kb on - strand, within EX31_RS15855 at 26.220 kb on - strand, within EX31_RS15855 at 26.220 kb on - strand, within EX31_RS15855 at 26.220 kb on - strand, within EX31_RS15855 at 26.221 kb on + strand, within EX31_RS15855 at 26.221 kb on + strand, within EX31_RS15855 at 26.221 kb on + strand, within EX31_RS15855 at 26.221 kb on + strand, within EX31_RS15855 at 26.222 kb on - strand, within EX31_RS15855 at 26.222 kb on - strand, within EX31_RS15855 at 26.222 kb on - strand, within EX31_RS15855 at 26.222 kb on - strand, within EX31_RS15855 at 26.251 kb on + strand, within EX31_RS15855 at 26.254 kb on + strand, within EX31_RS15855 at 26.254 kb on + strand, within EX31_RS15855 at 26.254 kb on + strand, within EX31_RS15855 at 26.254 kb on + strand, within EX31_RS15855 at 26.315 kb on - strand, within EX31_RS15855 at 26.321 kb on + strand, within EX31_RS15855 at 26.321 kb on + strand, within EX31_RS15855 at 26.429 kb on + strand, within EX31_RS15855 at 26.429 kb on + strand, within EX31_RS15855 at 26.429 kb on + strand, within EX31_RS15855 at 26.430 kb on - strand, within EX31_RS15855 at 26.489 kb on + strand, within EX31_RS15855 at 26.490 kb on - strand, within EX31_RS15855 at 26.591 kb on - strand, within EX31_RS15855 at 26.661 kb on + strand, within EX31_RS15855 at 26.737 kb on + strand, within EX31_RS15855 at 26.755 kb on + strand, within EX31_RS15855 at 26.795 kb on + strand, within EX31_RS15855 at 26.795 kb on + strand, within EX31_RS15855 at 26.796 kb on - strand, within EX31_RS15855 at 26.846 kb on - strand at 26.878 kb on + strand at 26.878 kb on + strand at 26.878 kb on + strand at 26.878 kb on + strand at 26.879 kb on - strand at 26.879 kb on - strand at 26.879 kb on - strand at 26.879 kb on - strand at 26.879 kb on - strand at 26.911 kb on + strand at 26.911 kb on + strand at 26.911 kb on + strand at 26.911 kb on + strand at 26.911 kb on + strand at 26.911 kb on + strand at 26.911 kb on + strand at 26.911 kb on + strand at 26.911 kb on + strand at 26.911 kb on + strand at 26.911 kb on + strand at 26.911 kb on + strand at 26.911 kb on + strand at 26.911 kb on + strand at 26.911 kb on + strand at 26.911 kb on + strand at 26.911 kb on + strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.912 kb on - strand at 26.930 kb on - strand at 26.955 kb on + strand at 26.956 kb on - strand at 26.961 kb on + strand at 26.962 kb on - strand at 26.962 kb on - strand at 26.962 kb on - strand at 26.997 kb on - strand, within EX31_RS15860 at 27.093 kb on - strand, within EX31_RS15860 at 27.112 kb on + strand, within EX31_RS15860 at 27.112 kb on + strand, within EX31_RS15860 at 27.112 kb on + strand, within EX31_RS15860 at 27.112 kb on + strand, within EX31_RS15860 at 27.112 kb on + strand, within EX31_RS15860 at 27.113 kb on - strand, within EX31_RS15860 at 27.113 kb on - strand, within EX31_RS15860 at 27.145 kb on + strand, within EX31_RS15860 at 27.171 kb on + strand, within EX31_RS15860 at 27.171 kb on + strand, within EX31_RS15860 at 27.172 kb on - strand, within EX31_RS15860 at 27.172 kb on - strand, within EX31_RS15860 at 27.172 kb on - strand, within EX31_RS15860 at 27.172 kb on - strand, within EX31_RS15860 at 27.182 kb on + strand, within EX31_RS15860 at 27.182 kb on + strand, within EX31_RS15860 at 27.185 kb on + strand, within EX31_RS15860 at 27.185 kb on + strand, within EX31_RS15860 at 27.185 kb on + strand, within EX31_RS15860 at 27.185 kb on + strand, within EX31_RS15860 at 27.185 kb on + strand, within EX31_RS15860 at 27.186 kb on - strand, within EX31_RS15860 at 27.186 kb on - strand, within EX31_RS15860 at 27.300 kb on + strand, within EX31_RS15860 at 27.324 kb on + strand, within EX31_RS15860 at 27.324 kb on + strand, within EX31_RS15860 at 27.325 kb on - strand, within EX31_RS15860 at 27.325 kb on - strand, within EX31_RS15860 at 27.325 kb on - strand, within EX31_RS15860 at 27.325 kb on - strand, within EX31_RS15860 at 27.325 kb on - strand, within EX31_RS15860 at 27.467 kb on + strand at 27.474 kb on - strand at 27.499 kb on + strand at 27.537 kb on - strand at 27.537 kb on - strand at 27.555 kb on + strand at 27.555 kb on + strand at 27.556 kb on - strand at 27.556 kb on - strand at 27.556 kb on - strand at 27.649 kb on + strand at 27.650 kb on - strand at 27.650 kb on - strand at 27.672 kb on + strand at 27.672 kb on + strand at 27.672 kb on + strand at 27.673 kb on - strand at 27.683 kb on - strand at 27.683 kb on - strand at 27.704 kb on - strand at 27.737 kb on - strand at 27.863 kb on - strand, within EX31_RS15865 at 27.919 kb on + strand, within EX31_RS15865 at 27.939 kb on + strand, within EX31_RS15865 at 27.939 kb on + strand, within EX31_RS15865 at 27.940 kb on - strand, within EX31_RS15865 at 27.940 kb on - strand, within EX31_RS15865 at 27.971 kb on - strand, within EX31_RS15865 at 28.098 kb on + strand, within EX31_RS15865 at 28.098 kb on + strand, within EX31_RS15865 at 28.098 kb on + strand, within EX31_RS15865 at 28.099 kb on - strand, within EX31_RS15865 at 28.099 kb on - strand, within EX31_RS15865 at 28.173 kb on + strand, within EX31_RS15865 at 28.174 kb on - strand, within EX31_RS15865 at 28.196 kb on - strand, within EX31_RS15865 at 28.334 kb on + strand, within EX31_RS15865 at 28.334 kb on + strand, within EX31_RS15865 at 28.335 kb on - strand, within EX31_RS15865 at 28.339 kb on + strand, within EX31_RS15865 at 28.339 kb on + strand, within EX31_RS15865 at 28.339 kb on + strand, within EX31_RS15865 at 28.340 kb on - strand, within EX31_RS15865
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 25,952 - EX31_RS15850 0.84 +1.7 25,952 - EX31_RS15850 0.84 -0.8 25,952 - EX31_RS15850 0.84 +0.4 25,952 - EX31_RS15850 0.84 -0.4 25,996 + +0.1 26,008 + -0.4 26,019 + +0.8 26,019 + +0.6 26,019 + +0.5 26,019 + -1.3 26,020 - +0.6 26,020 - +0.4 26,020 - +0.5 26,020 - -0.4 26,020 - -1.1 26,040 - +0.2 26,052 + -0.0 26,052 + +0.1 26,052 + -0.3 26,052 + -0.7 26,053 - +0.5 26,053 - -0.0 26,053 - +0.9 26,053 - +0.7 26,053 - +0.4 26,053 - -2.4 26,088 - +0.9 26,130 + EX31_RS15855 0.11 -0.2 26,130 + EX31_RS15855 0.11 +0.6 26,130 + EX31_RS15855 0.11 +0.7 26,130 + EX31_RS15855 0.11 +0.1 26,130 + EX31_RS15855 0.11 -1.0 26,131 - EX31_RS15855 0.11 +0.3 26,131 - EX31_RS15855 0.11 +0.5 26,131 - EX31_RS15855 0.11 -0.1 26,131 - EX31_RS15855 0.11 -0.3 26,131 - EX31_RS15855 0.11 -1.0 26,144 + EX31_RS15855 0.12 +1.0 26,144 + EX31_RS15855 0.12 +1.3 26,144 + EX31_RS15855 0.12 -0.3 26,144 + EX31_RS15855 0.12 +0.5 26,144 + EX31_RS15855 0.12 +0.8 26,145 - EX31_RS15855 0.12 -0.1 26,145 - EX31_RS15855 0.12 -0.3 26,179 + EX31_RS15855 0.16 -1.3 26,180 - EX31_RS15855 0.16 +0.4 26,186 + EX31_RS15855 0.17 -0.6 26,186 + EX31_RS15855 0.17 +0.1 26,187 - EX31_RS15855 0.17 +0.6 26,187 - EX31_RS15855 0.17 -0.1 26,187 - EX31_RS15855 0.17 +0.5 26,198 + EX31_RS15855 0.18 -1.8 26,198 + EX31_RS15855 0.18 +0.8 26,198 + EX31_RS15855 0.18 +0.3 26,198 + EX31_RS15855 0.18 +0.4 26,198 + EX31_RS15855 0.18 +0.3 26,199 - EX31_RS15855 0.19 -0.3 26,199 - EX31_RS15855 0.19 -0.4 26,199 - EX31_RS15855 0.19 +0.9 26,219 + EX31_RS15855 0.21 +0.9 26,219 + EX31_RS15855 0.21 +0.9 26,219 + EX31_RS15855 0.21 -0.2 26,219 + EX31_RS15855 0.21 +0.8 26,219 + EX31_RS15855 0.21 +1.3 26,219 + EX31_RS15855 0.21 +0.2 26,219 + EX31_RS15855 0.21 +0.3 26,219 + EX31_RS15855 0.21 -0.3 26,220 - EX31_RS15855 0.21 -1.0 26,220 - EX31_RS15855 0.21 +0.3 26,220 - EX31_RS15855 0.21 -1.1 26,220 - EX31_RS15855 0.21 -0.7 26,220 - EX31_RS15855 0.21 -0.1 26,220 - EX31_RS15855 0.21 +1.7 26,220 - EX31_RS15855 0.21 -0.6 26,220 - EX31_RS15855 0.21 +0.2 26,220 - EX31_RS15855 0.21 -0.2 26,220 - EX31_RS15855 0.21 +0.4 26,220 - EX31_RS15855 0.21 -0.5 26,220 - EX31_RS15855 0.21 +0.4 26,221 + EX31_RS15855 0.21 -0.7 26,221 + EX31_RS15855 0.21 +0.1 26,221 + EX31_RS15855 0.21 +0.6 26,221 + EX31_RS15855 0.21 +0.2 26,222 - EX31_RS15855 0.21 -0.1 26,222 - EX31_RS15855 0.21 +1.1 26,222 - EX31_RS15855 0.21 -0.3 26,222 - EX31_RS15855 0.21 +1.3 26,251 + EX31_RS15855 0.24 +0.4 26,254 + EX31_RS15855 0.25 -0.5 26,254 + EX31_RS15855 0.25 +0.4 26,254 + EX31_RS15855 0.25 +0.7 26,254 + EX31_RS15855 0.25 +0.8 26,315 - EX31_RS15855 0.32 -2.8 26,321 + EX31_RS15855 0.33 +0.0 26,321 + EX31_RS15855 0.33 -1.2 26,429 + EX31_RS15855 0.45 +1.1 26,429 + EX31_RS15855 0.45 -0.1 26,429 + EX31_RS15855 0.45 +2.3 26,430 - EX31_RS15855 0.45 +0.7 26,489 + EX31_RS15855 0.52 +0.7 26,490 - EX31_RS15855 0.52 +0.2 26,591 - EX31_RS15855 0.64 +0.1 26,661 + EX31_RS15855 0.72 +0.5 26,737 + EX31_RS15855 0.80 -0.5 26,755 + EX31_RS15855 0.82 +0.5 26,795 + EX31_RS15855 0.87 +0.3 26,795 + EX31_RS15855 0.87 -0.3 26,796 - EX31_RS15855 0.87 +0.7 26,846 - -0.9 26,878 + -0.4 26,878 + -0.8 26,878 + -2.1 26,878 + +0.3 26,879 - -0.6 26,879 - +0.6 26,879 - -0.2 26,879 - -0.5 26,879 - -1.2 26,911 + +0.0 26,911 + +0.5 26,911 + -0.5 26,911 + -0.6 26,911 + +0.7 26,911 + -0.1 26,911 + +1.0 26,911 + +0.0 26,911 + -0.2 26,911 + -0.3 26,911 + -0.8 26,911 + +1.6 26,911 + -0.1 26,911 + -0.7 26,911 + +0.1 26,911 + +0.8 26,911 + +0.3 26,912 - +0.3 26,912 - +0.1 26,912 - -0.8 26,912 - -0.6 26,912 - -0.5 26,912 - +0.5 26,912 - +0.3 26,912 - -1.1 26,912 - +0.3 26,912 - +1.2 26,912 - +0.2 26,912 - +0.4 26,912 - +1.3 26,912 - -0.2 26,912 - -0.7 26,912 - +0.8 26,912 - +0.8 26,912 - +0.6 26,912 - +0.3 26,912 - -0.1 26,912 - -1.7 26,930 - -0.2 26,955 + +1.1 26,956 - +0.1 26,961 + -0.2 26,962 - +0.2 26,962 - +0.7 26,962 - -1.0 26,997 - EX31_RS15860 0.13 -0.1 27,093 - EX31_RS15860 0.30 -0.2 27,112 + EX31_RS15860 0.33 +1.3 27,112 + EX31_RS15860 0.33 +0.8 27,112 + EX31_RS15860 0.33 +0.8 27,112 + EX31_RS15860 0.33 -0.0 27,112 + EX31_RS15860 0.33 -0.1 27,113 - EX31_RS15860 0.33 -0.5 27,113 - EX31_RS15860 0.33 -1.4 27,145 + EX31_RS15860 0.38 +1.0 27,171 + EX31_RS15860 0.43 +0.7 27,171 + EX31_RS15860 0.43 +1.0 27,172 - EX31_RS15860 0.43 +0.4 27,172 - EX31_RS15860 0.43 +0.2 27,172 - EX31_RS15860 0.43 -0.7 27,172 - EX31_RS15860 0.43 -0.9 27,182 + EX31_RS15860 0.45 -1.3 27,182 + EX31_RS15860 0.45 -0.5 27,185 + EX31_RS15860 0.45 -0.6 27,185 + EX31_RS15860 0.45 +0.2 27,185 + EX31_RS15860 0.45 -0.6 27,185 + EX31_RS15860 0.45 -0.5 27,185 + EX31_RS15860 0.45 -0.3 27,186 - EX31_RS15860 0.45 -0.2 27,186 - EX31_RS15860 0.45 +0.0 27,300 + EX31_RS15860 0.65 +0.6 27,324 + EX31_RS15860 0.69 -0.2 27,324 + EX31_RS15860 0.69 +0.2 27,325 - EX31_RS15860 0.69 +0.3 27,325 - EX31_RS15860 0.69 +0.9 27,325 - EX31_RS15860 0.69 -0.9 27,325 - EX31_RS15860 0.69 -1.3 27,325 - EX31_RS15860 0.69 -0.7 27,467 + -0.2 27,474 - +0.6 27,499 + -0.3 27,537 - -0.3 27,537 - -0.9 27,555 + -1.1 27,555 + +0.7 27,556 - -0.1 27,556 - -0.4 27,556 - -0.2 27,649 + +2.0 27,650 - -0.9 27,650 - +0.1 27,672 + +0.8 27,672 + -1.1 27,672 + -0.7 27,673 - -0.4 27,683 - +1.5 27,683 - -0.0 27,704 - +0.0 27,737 - -1.2 27,863 - EX31_RS15865 0.11 -1.7 27,919 + EX31_RS15865 0.14 +0.4 27,939 + EX31_RS15865 0.15 -1.3 27,939 + EX31_RS15865 0.15 -0.1 27,940 - EX31_RS15865 0.15 -0.3 27,940 - EX31_RS15865 0.15 -1.2 27,971 - EX31_RS15865 0.16 -0.3 28,098 + EX31_RS15865 0.23 -0.2 28,098 + EX31_RS15865 0.23 +0.8 28,098 + EX31_RS15865 0.23 -1.6 28,099 - EX31_RS15865 0.23 -0.1 28,099 - EX31_RS15865 0.23 -1.8 28,173 + EX31_RS15865 0.28 -0.7 28,174 - EX31_RS15865 0.28 -0.9 28,196 - EX31_RS15865 0.29 -2.7 28,334 + EX31_RS15865 0.36 -0.6 28,334 + EX31_RS15865 0.36 -1.6 28,335 - EX31_RS15865 0.36 -1.3 28,339 + EX31_RS15865 0.37 -0.9 28,339 + EX31_RS15865 0.37 +0.3 28,339 + EX31_RS15865 0.37 +0.3 28,340 - EX31_RS15865 0.37 -1.2
Or see this region's nucleotide sequence