Strain Fitness in Rahnella sp. WP5 around EX31_RS14275

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14270 and EX31_RS14275 are separated by 143 nucleotidesEX31_RS14275 and EX31_RS14280 are separated by 56 nucleotides EX31_RS14270: EX31_RS14270 - glycerol kinase GlpK, at 35,551 to 37,074 _RS14270 EX31_RS14275: EX31_RS14275 - class II fructose-bisphosphatase, at 37,218 to 38,228 _RS14275 EX31_RS14280: EX31_RS14280 - multidrug efflux MFS transporter EmrD, at 38,285 to 39,478 _RS14280 Position (kb) 37 38 39Strain fitness (log2 ratio) -2 -1 0 1 2at 36.239 kb on - strand, within EX31_RS14270at 36.239 kb on - strand, within EX31_RS14270at 36.261 kb on + strand, within EX31_RS14270at 36.262 kb on - strand, within EX31_RS14270at 36.276 kb on + strand, within EX31_RS14270at 36.283 kb on - strand, within EX31_RS14270at 36.283 kb on - strand, within EX31_RS14270at 36.319 kb on + strand, within EX31_RS14270at 36.320 kb on - strand, within EX31_RS14270at 36.320 kb on - strand, within EX31_RS14270at 36.320 kb on - strand, within EX31_RS14270at 36.335 kb on + strand, within EX31_RS14270at 36.336 kb on - strand, within EX31_RS14270at 36.336 kb on - strand, within EX31_RS14270at 36.336 kb on - strand, within EX31_RS14270at 36.361 kb on + strand, within EX31_RS14270at 36.361 kb on + strand, within EX31_RS14270at 36.362 kb on - strand, within EX31_RS14270at 36.362 kb on - strand, within EX31_RS14270at 36.362 kb on - strand, within EX31_RS14270at 36.466 kb on + strand, within EX31_RS14270at 36.466 kb on + strand, within EX31_RS14270at 36.485 kb on + strand, within EX31_RS14270at 36.485 kb on + strand, within EX31_RS14270at 36.485 kb on + strand, within EX31_RS14270at 36.486 kb on - strand, within EX31_RS14270at 36.559 kb on + strand, within EX31_RS14270at 36.595 kb on + strand, within EX31_RS14270at 36.596 kb on - strand, within EX31_RS14270at 36.599 kb on + strand, within EX31_RS14270at 36.599 kb on + strand, within EX31_RS14270at 36.600 kb on - strand, within EX31_RS14270at 36.600 kb on - strand, within EX31_RS14270at 36.644 kb on - strand, within EX31_RS14270at 36.725 kb on - strand, within EX31_RS14270at 36.741 kb on - strand, within EX31_RS14270at 36.741 kb on - strand, within EX31_RS14270at 36.741 kb on - strand, within EX31_RS14270at 36.741 kb on - strand, within EX31_RS14270at 37.005 kb on + strandat 37.005 kb on + strandat 37.005 kb on + strandat 37.005 kb on + strandat 37.005 kb on + strandat 37.006 kb on - strandat 37.006 kb on - strandat 37.006 kb on - strandat 37.006 kb on - strandat 37.006 kb on - strandat 37.006 kb on - strandat 37.006 kb on - strandat 37.015 kb on + strandat 37.015 kb on + strandat 37.017 kb on + strandat 37.017 kb on + strandat 37.018 kb on - strandat 37.018 kb on - strandat 37.072 kb on + strandat 37.073 kb on - strandat 37.083 kb on + strandat 37.083 kb on + strandat 37.083 kb on + strandat 37.083 kb on + strandat 37.083 kb on + strandat 37.083 kb on + strandat 37.083 kb on + strandat 37.083 kb on + strandat 37.083 kb on + strandat 37.083 kb on + strandat 37.084 kb on - strandat 37.084 kb on - strandat 37.084 kb on - strandat 37.084 kb on - strandat 37.084 kb on - strandat 37.084 kb on - strandat 37.084 kb on - strandat 37.084 kb on - strandat 37.153 kb on + strandat 37.205 kb on + strandat 37.206 kb on - strandat 37.231 kb on + strandat 37.231 kb on + strandat 37.232 kb on - strandat 37.232 kb on - strandat 37.232 kb on - strandat 37.279 kb on - strandat 37.279 kb on - strandat 37.343 kb on + strand, within EX31_RS14275at 37.343 kb on + strand, within EX31_RS14275at 37.344 kb on - strand, within EX31_RS14275at 37.352 kb on + strand, within EX31_RS14275at 37.370 kb on + strand, within EX31_RS14275at 37.370 kb on + strand, within EX31_RS14275at 37.371 kb on - strand, within EX31_RS14275at 37.373 kb on + strand, within EX31_RS14275at 37.373 kb on + strand, within EX31_RS14275at 37.373 kb on + strand, within EX31_RS14275at 37.374 kb on - strand, within EX31_RS14275at 37.374 kb on - strand, within EX31_RS14275at 37.374 kb on - strand, within EX31_RS14275at 37.374 kb on - strand, within EX31_RS14275at 37.374 kb on - strand, within EX31_RS14275at 37.374 kb on - strand, within EX31_RS14275at 37.374 kb on - strand, within EX31_RS14275at 37.416 kb on + strand, within EX31_RS14275at 37.416 kb on + strand, within EX31_RS14275at 37.416 kb on + strand, within EX31_RS14275at 37.416 kb on + strand, within EX31_RS14275at 37.416 kb on + strand, within EX31_RS14275at 37.416 kb on + strand, within EX31_RS14275at 37.416 kb on + strand, within EX31_RS14275at 37.416 kb on + strand, within EX31_RS14275at 37.416 kb on + strand, within EX31_RS14275at 37.416 kb on + strand, within EX31_RS14275at 37.417 kb on - strand, within EX31_RS14275at 37.417 kb on - strand, within EX31_RS14275at 37.417 kb on - strand, within EX31_RS14275at 37.417 kb on - strand, within EX31_RS14275at 37.417 kb on - strand, within EX31_RS14275at 37.417 kb on - strand, within EX31_RS14275at 37.417 kb on - strand, within EX31_RS14275at 37.417 kb on - strand, within EX31_RS14275at 37.417 kb on - strand, within EX31_RS14275at 37.417 kb on - strand, within EX31_RS14275at 37.417 kb on - strand, within EX31_RS14275at 37.417 kb on - strand, within EX31_RS14275at 37.418 kb on + strand, within EX31_RS14275at 37.419 kb on - strand, within EX31_RS14275at 37.419 kb on - strand, within EX31_RS14275at 37.475 kb on + strand, within EX31_RS14275at 37.476 kb on - strand, within EX31_RS14275at 37.484 kb on + strand, within EX31_RS14275at 37.485 kb on - strand, within EX31_RS14275at 37.572 kb on + strand, within EX31_RS14275at 37.572 kb on + strand, within EX31_RS14275at 37.572 kb on + strand, within EX31_RS14275at 37.572 kb on + strand, within EX31_RS14275at 37.572 kb on + strand, within EX31_RS14275at 37.572 kb on + strand, within EX31_RS14275at 37.572 kb on + strand, within EX31_RS14275at 37.572 kb on + strand, within EX31_RS14275at 37.572 kb on + strand, within EX31_RS14275at 37.572 kb on + strand, within EX31_RS14275at 37.572 kb on + strand, within EX31_RS14275at 37.572 kb on + strand, within EX31_RS14275at 37.572 kb on + strand, within EX31_RS14275at 37.572 kb on + strand, within EX31_RS14275at 37.572 kb on + strand, within EX31_RS14275at 37.572 kb on + strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.573 kb on - strand, within EX31_RS14275at 37.617 kb on - strand, within EX31_RS14275at 37.658 kb on + strand, within EX31_RS14275at 37.693 kb on + strand, within EX31_RS14275at 37.693 kb on + strand, within EX31_RS14275at 37.693 kb on + strand, within EX31_RS14275at 37.693 kb on + strand, within EX31_RS14275at 37.693 kb on + strand, within EX31_RS14275at 37.693 kb on + strand, within EX31_RS14275at 37.693 kb on + strand, within EX31_RS14275at 37.693 kb on + strand, within EX31_RS14275at 37.693 kb on + strand, within EX31_RS14275at 37.693 kb on + strand, within EX31_RS14275at 37.694 kb on - strand, within EX31_RS14275at 37.694 kb on - strand, within EX31_RS14275at 37.694 kb on - strand, within EX31_RS14275at 37.694 kb on - strand, within EX31_RS14275at 37.833 kb on + strand, within EX31_RS14275at 37.833 kb on + strand, within EX31_RS14275at 37.833 kb on + strand, within EX31_RS14275at 37.833 kb on + strand, within EX31_RS14275at 37.941 kb on - strand, within EX31_RS14275at 38.030 kb on + strand, within EX31_RS14275at 38.031 kb on - strand, within EX31_RS14275at 38.070 kb on - strand, within EX31_RS14275at 38.072 kb on + strand, within EX31_RS14275at 38.184 kb on + strandat 38.184 kb on + strandat 38.185 kb on - strandat 38.219 kb on + strandat 38.220 kb on - strandat 38.220 kb on - strandat 38.220 kb on - strandat 38.220 kb on - strandat 38.222 kb on + strandat 38.223 kb on - strandat 38.293 kb on + strandat 38.293 kb on + strandat 38.293 kb on + strandat 38.293 kb on + strandat 38.294 kb on - strandat 38.294 kb on - strandat 38.294 kb on - strandat 38.294 kb on - strandat 38.294 kb on - strandat 38.339 kb on + strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.575 kb on + strand, within EX31_RS14280at 38.575 kb on + strand, within EX31_RS14280at 38.575 kb on + strand, within EX31_RS14280at 38.575 kb on + strand, within EX31_RS14280at 38.576 kb on - strand, within EX31_RS14280at 38.576 kb on - strand, within EX31_RS14280at 38.576 kb on - strand, within EX31_RS14280at 38.576 kb on - strand, within EX31_RS14280at 38.576 kb on - strand, within EX31_RS14280at 38.576 kb on - strand, within EX31_RS14280at 38.685 kb on + strand, within EX31_RS14280at 38.685 kb on + strand, within EX31_RS14280at 38.722 kb on + strand, within EX31_RS14280at 38.835 kb on + strand, within EX31_RS14280at 38.836 kb on - strand, within EX31_RS14280at 38.864 kb on + strand, within EX31_RS14280at 38.864 kb on + strand, within EX31_RS14280at 38.940 kb on + strand, within EX31_RS14280at 38.941 kb on - strand, within EX31_RS14280at 38.941 kb on - strand, within EX31_RS14280at 38.941 kb on - strand, within EX31_RS14280at 39.090 kb on - strand, within EX31_RS14280at 39.105 kb on + strand, within EX31_RS14280at 39.105 kb on + strand, within EX31_RS14280at 39.106 kb on - strand, within EX31_RS14280at 39.134 kb on + strand, within EX31_RS14280at 39.224 kb on + strand, within EX31_RS14280at 39.225 kb on - strand, within EX31_RS14280at 39.225 kb on - strand, within EX31_RS14280

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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36,239 - EX31_RS14270 0.45 +0.7
36,239 - EX31_RS14270 0.45 +1.2
36,261 + EX31_RS14270 0.47 +0.2
36,262 - EX31_RS14270 0.47 +1.0
36,276 + EX31_RS14270 0.48 -0.3
36,283 - EX31_RS14270 0.48 +0.0
36,283 - EX31_RS14270 0.48 +0.1
36,319 + EX31_RS14270 0.50 +0.3
36,320 - EX31_RS14270 0.50 -1.4
36,320 - EX31_RS14270 0.50 +0.3
36,320 - EX31_RS14270 0.50 +0.6
36,335 + EX31_RS14270 0.51 -0.1
36,336 - EX31_RS14270 0.52 +1.8
36,336 - EX31_RS14270 0.52 -0.1
36,336 - EX31_RS14270 0.52 +0.3
36,361 + EX31_RS14270 0.53 -0.4
36,361 + EX31_RS14270 0.53 +0.5
36,362 - EX31_RS14270 0.53 +0.2
36,362 - EX31_RS14270 0.53 +0.4
36,362 - EX31_RS14270 0.53 -0.1
36,466 + EX31_RS14270 0.60 -0.0
36,466 + EX31_RS14270 0.60 +0.4
36,485 + EX31_RS14270 0.61 +0.7
36,485 + EX31_RS14270 0.61 +1.1
36,485 + EX31_RS14270 0.61 -0.6
36,486 - EX31_RS14270 0.61 +0.8
36,559 + EX31_RS14270 0.66 +0.7
36,595 + EX31_RS14270 0.69 +1.2
36,596 - EX31_RS14270 0.69 +1.2
36,599 + EX31_RS14270 0.69 +0.1
36,599 + EX31_RS14270 0.69 +0.9
36,600 - EX31_RS14270 0.69 -0.4
36,600 - EX31_RS14270 0.69 -0.2
36,644 - EX31_RS14270 0.72 +0.2
36,725 - EX31_RS14270 0.77 +1.5
36,741 - EX31_RS14270 0.78 -0.3
36,741 - EX31_RS14270 0.78 +1.2
36,741 - EX31_RS14270 0.78 -0.3
36,741 - EX31_RS14270 0.78 +0.4
37,005 + +1.4
37,005 + +0.8
37,005 + +1.3
37,005 + -0.1
37,005 + +0.5
37,006 - -0.7
37,006 - -0.1
37,006 - +0.8
37,006 - -0.7
37,006 - +0.3
37,006 - +0.7
37,006 - -0.3
37,015 + -0.1
37,015 + +0.2
37,017 + +0.4
37,017 + +1.0
37,018 - +0.6
37,018 - -0.7
37,072 + +0.7
37,073 - -0.4
37,083 + -1.3
37,083 + +1.9
37,083 + +0.3
37,083 + +0.2
37,083 + +0.2
37,083 + -0.9
37,083 + -2.5
37,083 + -0.0
37,083 + -0.5
37,083 + +0.7
37,084 - -0.2
37,084 - +0.4
37,084 - +0.0
37,084 - +0.1
37,084 - -0.1
37,084 - -0.1
37,084 - +0.9
37,084 - -0.5
37,153 + +0.4
37,205 + +0.1
37,206 - -0.1
37,231 + -1.5
37,231 + +0.5
37,232 - -0.5
37,232 - +2.2
37,232 - +0.6
37,279 - -1.4
37,279 - +0.5
37,343 + EX31_RS14275 0.12 +0.1
37,343 + EX31_RS14275 0.12 +0.4
37,344 - EX31_RS14275 0.12 -0.3
37,352 + EX31_RS14275 0.13 -0.4
37,370 + EX31_RS14275 0.15 -1.5
37,370 + EX31_RS14275 0.15 +0.8
37,371 - EX31_RS14275 0.15 +0.3
37,373 + EX31_RS14275 0.15 -0.2
37,373 + EX31_RS14275 0.15 +1.0
37,373 + EX31_RS14275 0.15 -0.7
37,374 - EX31_RS14275 0.15 +0.5
37,374 - EX31_RS14275 0.15 -0.3
37,374 - EX31_RS14275 0.15 +0.6
37,374 - EX31_RS14275 0.15 +0.5
37,374 - EX31_RS14275 0.15 +0.6
37,374 - EX31_RS14275 0.15 +1.2
37,374 - EX31_RS14275 0.15 +0.6
37,416 + EX31_RS14275 0.20 -0.1
37,416 + EX31_RS14275 0.20 +0.8
37,416 + EX31_RS14275 0.20 -0.5
37,416 + EX31_RS14275 0.20 +0.5
37,416 + EX31_RS14275 0.20 -0.3
37,416 + EX31_RS14275 0.20 -0.5
37,416 + EX31_RS14275 0.20 +0.2
37,416 + EX31_RS14275 0.20 +0.1
37,416 + EX31_RS14275 0.20 +0.2
37,416 + EX31_RS14275 0.20 +1.0
37,417 - EX31_RS14275 0.20 +0.0
37,417 - EX31_RS14275 0.20 +0.6
37,417 - EX31_RS14275 0.20 +1.6
37,417 - EX31_RS14275 0.20 -0.2
37,417 - EX31_RS14275 0.20 +0.6
37,417 - EX31_RS14275 0.20 -0.0
37,417 - EX31_RS14275 0.20 +1.3
37,417 - EX31_RS14275 0.20 -0.5
37,417 - EX31_RS14275 0.20 -0.5
37,417 - EX31_RS14275 0.20 -0.2
37,417 - EX31_RS14275 0.20 +0.2
37,417 - EX31_RS14275 0.20 -0.7
37,418 + EX31_RS14275 0.20 -0.1
37,419 - EX31_RS14275 0.20 +1.5
37,419 - EX31_RS14275 0.20 -0.4
37,475 + EX31_RS14275 0.25 +0.1
37,476 - EX31_RS14275 0.26 +0.6
37,484 + EX31_RS14275 0.26 -0.4
37,485 - EX31_RS14275 0.26 +2.2
37,572 + EX31_RS14275 0.35 +0.8
37,572 + EX31_RS14275 0.35 -0.1
37,572 + EX31_RS14275 0.35 -0.4
37,572 + EX31_RS14275 0.35 +0.2
37,572 + EX31_RS14275 0.35 +0.2
37,572 + EX31_RS14275 0.35 +0.2
37,572 + EX31_RS14275 0.35 +0.9
37,572 + EX31_RS14275 0.35 -0.2
37,572 + EX31_RS14275 0.35 +0.2
37,572 + EX31_RS14275 0.35 -0.5
37,572 + EX31_RS14275 0.35 +0.5
37,572 + EX31_RS14275 0.35 -0.2
37,572 + EX31_RS14275 0.35 +0.7
37,572 + EX31_RS14275 0.35 +0.0
37,572 + EX31_RS14275 0.35 -2.3
37,572 + EX31_RS14275 0.35 -0.4
37,573 - EX31_RS14275 0.35 +0.7
37,573 - EX31_RS14275 0.35 -0.5
37,573 - EX31_RS14275 0.35 -0.6
37,573 - EX31_RS14275 0.35 +0.4
37,573 - EX31_RS14275 0.35 -0.1
37,573 - EX31_RS14275 0.35 -0.2
37,573 - EX31_RS14275 0.35 +0.3
37,573 - EX31_RS14275 0.35 +1.0
37,573 - EX31_RS14275 0.35 +1.4
37,573 - EX31_RS14275 0.35 -0.3
37,573 - EX31_RS14275 0.35 +1.2
37,573 - EX31_RS14275 0.35 +0.5
37,573 - EX31_RS14275 0.35 -0.7
37,573 - EX31_RS14275 0.35 +0.9
37,573 - EX31_RS14275 0.35 +0.1
37,573 - EX31_RS14275 0.35 +0.2
37,573 - EX31_RS14275 0.35 -0.7
37,573 - EX31_RS14275 0.35 +0.4
37,573 - EX31_RS14275 0.35 -0.6
37,573 - EX31_RS14275 0.35 -0.8
37,573 - EX31_RS14275 0.35 +0.4
37,573 - EX31_RS14275 0.35 +0.4
37,617 - EX31_RS14275 0.39 -0.6
37,658 + EX31_RS14275 0.44 +1.4
37,693 + EX31_RS14275 0.47 +0.2
37,693 + EX31_RS14275 0.47 +0.9
37,693 + EX31_RS14275 0.47 -0.4
37,693 + EX31_RS14275 0.47 -1.2
37,693 + EX31_RS14275 0.47 +0.5
37,693 + EX31_RS14275 0.47 +0.8
37,693 + EX31_RS14275 0.47 +0.9
37,693 + EX31_RS14275 0.47 -0.3
37,693 + EX31_RS14275 0.47 -0.0
37,693 + EX31_RS14275 0.47 +0.3
37,694 - EX31_RS14275 0.47 +0.8
37,694 - EX31_RS14275 0.47 +1.2
37,694 - EX31_RS14275 0.47 +0.5
37,694 - EX31_RS14275 0.47 -0.4
37,833 + EX31_RS14275 0.61 -0.7
37,833 + EX31_RS14275 0.61 +0.3
37,833 + EX31_RS14275 0.61 -0.5
37,833 + EX31_RS14275 0.61 +0.1
37,941 - EX31_RS14275 0.72 +0.1
38,030 + EX31_RS14275 0.80 -0.4
38,031 - EX31_RS14275 0.80 -0.9
38,070 - EX31_RS14275 0.84 +0.3
38,072 + EX31_RS14275 0.84 -1.4
38,184 + +0.9
38,184 + +0.5
38,185 - +0.5
38,219 + +0.6
38,220 - -0.5
38,220 - -0.3
38,220 - -0.4
38,220 - +0.2
38,222 + +0.7
38,223 - +0.0
38,293 + -0.4
38,293 + +0.7
38,293 + +0.2
38,293 + -0.0
38,294 - -0.4
38,294 - -1.5
38,294 - +0.7
38,294 - -0.5
38,294 - +0.0
38,339 + -0.8
38,340 - -1.0
38,340 - -1.1
38,340 - -0.8
38,340 - -0.7
38,340 - +0.8
38,340 - -0.1
38,575 + EX31_RS14280 0.24 +0.1
38,575 + EX31_RS14280 0.24 +0.6
38,575 + EX31_RS14280 0.24 -0.1
38,575 + EX31_RS14280 0.24 -0.2
38,576 - EX31_RS14280 0.24 -0.3
38,576 - EX31_RS14280 0.24 -0.2
38,576 - EX31_RS14280 0.24 +1.0
38,576 - EX31_RS14280 0.24 +1.3
38,576 - EX31_RS14280 0.24 +0.6
38,576 - EX31_RS14280 0.24 -1.1
38,685 + EX31_RS14280 0.34 +0.6
38,685 + EX31_RS14280 0.34 -0.9
38,722 + EX31_RS14280 0.37 -0.7
38,835 + EX31_RS14280 0.46 -0.6
38,836 - EX31_RS14280 0.46 -0.8
38,864 + EX31_RS14280 0.48 +0.4
38,864 + EX31_RS14280 0.48 -0.7
38,940 + EX31_RS14280 0.55 -1.6
38,941 - EX31_RS14280 0.55 +0.5
38,941 - EX31_RS14280 0.55 -0.4
38,941 - EX31_RS14280 0.55 +0.9
39,090 - EX31_RS14280 0.67 -0.7
39,105 + EX31_RS14280 0.69 +0.1
39,105 + EX31_RS14280 0.69 -0.8
39,106 - EX31_RS14280 0.69 +0.1
39,134 + EX31_RS14280 0.71 +0.2
39,224 + EX31_RS14280 0.79 +0.1
39,225 - EX31_RS14280 0.79 +0.4
39,225 - EX31_RS14280 0.79 +0.1

Or see this region's nucleotide sequence