Strain Fitness in Rahnella sp. WP5 around EX31_RS11440

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11435 and EX31_RS11440 are separated by 3 nucleotidesEX31_RS11440 and EX31_RS11445 overlap by 1 nucleotides EX31_RS11435: EX31_RS11435 - ATP phosphoribosyltransferase, at 221,118 to 222,017 _RS11435 EX31_RS11440: EX31_RS11440 - histidinol dehydrogenase, at 222,021 to 223,334 _RS11440 EX31_RS11445: EX31_RS11445 - histidinol-phosphate transaminase, at 223,334 to 224,467 _RS11445 Position (kb) 222 223 224Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 221.096 kb on + strandat 221.096 kb on + strandat 221.096 kb on + strandat 221.097 kb on - strandat 221.097 kb on - strandat 221.097 kb on - strandat 221.395 kb on - strand, within EX31_RS11435at 221.463 kb on + strand, within EX31_RS11435at 221.464 kb on - strand, within EX31_RS11435at 221.529 kb on + strand, within EX31_RS11435at 221.529 kb on + strand, within EX31_RS11435at 221.766 kb on - strand, within EX31_RS11435at 221.799 kb on + strand, within EX31_RS11435at 221.799 kb on + strand, within EX31_RS11435at 221.799 kb on + strand, within EX31_RS11435at 221.799 kb on + strand, within EX31_RS11435at 221.799 kb on + strand, within EX31_RS11435at 221.799 kb on + strand, within EX31_RS11435at 221.800 kb on - strand, within EX31_RS11435at 221.800 kb on - strand, within EX31_RS11435at 221.800 kb on - strand, within EX31_RS11435at 221.804 kb on + strand, within EX31_RS11435at 221.804 kb on + strand, within EX31_RS11435at 221.804 kb on + strand, within EX31_RS11435at 221.804 kb on + strand, within EX31_RS11435at 221.804 kb on + strand, within EX31_RS11435at 221.804 kb on + strand, within EX31_RS11435at 221.804 kb on + strand, within EX31_RS11435at 221.804 kb on + strand, within EX31_RS11435at 221.805 kb on - strand, within EX31_RS11435at 221.805 kb on - strand, within EX31_RS11435at 222.015 kb on + strandat 222.015 kb on + strandat 222.206 kb on + strand, within EX31_RS11440at 222.268 kb on + strand, within EX31_RS11440at 222.281 kb on + strand, within EX31_RS11440at 222.317 kb on + strand, within EX31_RS11440at 222.373 kb on + strand, within EX31_RS11440at 222.398 kb on + strand, within EX31_RS11440at 222.417 kb on + strand, within EX31_RS11440at 222.419 kb on + strand, within EX31_RS11440at 222.420 kb on - strand, within EX31_RS11440at 222.454 kb on + strand, within EX31_RS11440at 222.455 kb on - strand, within EX31_RS11440at 222.457 kb on + strand, within EX31_RS11440at 222.458 kb on - strand, within EX31_RS11440at 222.458 kb on - strand, within EX31_RS11440at 222.540 kb on + strand, within EX31_RS11440at 222.574 kb on - strand, within EX31_RS11440at 222.574 kb on - strand, within EX31_RS11440at 222.666 kb on + strand, within EX31_RS11440at 222.667 kb on - strand, within EX31_RS11440at 222.667 kb on - strand, within EX31_RS11440at 222.667 kb on - strand, within EX31_RS11440at 222.667 kb on - strand, within EX31_RS11440at 222.977 kb on + strand, within EX31_RS11440at 222.977 kb on + strand, within EX31_RS11440at 223.053 kb on - strand, within EX31_RS11440at 223.111 kb on - strand, within EX31_RS11440at 223.143 kb on + strand, within EX31_RS11440at 223.144 kb on - strand, within EX31_RS11440at 223.149 kb on + strand, within EX31_RS11440at 223.244 kb on + strandat 223.375 kb on + strandat 223.375 kb on + strandat 223.376 kb on - strandat 223.376 kb on - strandat 223.457 kb on + strand, within EX31_RS11445at 223.550 kb on + strand, within EX31_RS11445at 223.550 kb on + strand, within EX31_RS11445at 223.679 kb on + strand, within EX31_RS11445at 223.679 kb on + strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.793 kb on + strand, within EX31_RS11445at 223.793 kb on + strand, within EX31_RS11445at 223.825 kb on + strand, within EX31_RS11445at 223.884 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.902 kb on - strand, within EX31_RS11445at 223.902 kb on - strand, within EX31_RS11445at 223.902 kb on - strand, within EX31_RS11445at 223.903 kb on + strand, within EX31_RS11445at 223.904 kb on - strand, within EX31_RS11445at 224.046 kb on + strand, within EX31_RS11445at 224.046 kb on + strand, within EX31_RS11445at 224.047 kb on - strand, within EX31_RS11445at 224.050 kb on - strand, within EX31_RS11445at 224.070 kb on - strand, within EX31_RS11445at 224.076 kb on + strand, within EX31_RS11445at 224.080 kb on + strand, within EX31_RS11445at 224.081 kb on - strand, within EX31_RS11445at 224.233 kb on + strand, within EX31_RS11445at 224.233 kb on + strand, within EX31_RS11445at 224.234 kb on - strand, within EX31_RS11445at 224.234 kb on - strand, within EX31_RS11445at 224.234 kb on - strand, within EX31_RS11445at 224.237 kb on + strand, within EX31_RS11445at 224.237 kb on + strand, within EX31_RS11445at 224.237 kb on + strand, within EX31_RS11445at 224.238 kb on - strand, within EX31_RS11445at 224.238 kb on - strand, within EX31_RS11445at 224.238 kb on - strand, within EX31_RS11445at 224.255 kb on + strand, within EX31_RS11445at 224.255 kb on + strand, within EX31_RS11445at 224.276 kb on - strand, within EX31_RS11445

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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221,096 + +1.7
221,096 + -1.3
221,096 + +0.1
221,097 - -1.2
221,097 - -1.4
221,097 - -2.6
221,395 - EX31_RS11435 0.31 -2.2
221,463 + EX31_RS11435 0.38 -3.2
221,464 - EX31_RS11435 0.38 -1.7
221,529 + EX31_RS11435 0.46 -1.0
221,529 + EX31_RS11435 0.46 -2.9
221,766 - EX31_RS11435 0.72 -2.4
221,799 + EX31_RS11435 0.76 -1.0
221,799 + EX31_RS11435 0.76 +0.0
221,799 + EX31_RS11435 0.76 +1.6
221,799 + EX31_RS11435 0.76 -1.4
221,799 + EX31_RS11435 0.76 -1.7
221,799 + EX31_RS11435 0.76 +0.6
221,800 - EX31_RS11435 0.76 -2.2
221,800 - EX31_RS11435 0.76 -1.7
221,800 - EX31_RS11435 0.76 -3.7
221,804 + EX31_RS11435 0.76 +1.6
221,804 + EX31_RS11435 0.76 -0.8
221,804 + EX31_RS11435 0.76 +2.2
221,804 + EX31_RS11435 0.76 +0.6
221,804 + EX31_RS11435 0.76 +0.6
221,804 + EX31_RS11435 0.76 -1.7
221,804 + EX31_RS11435 0.76 +0.6
221,804 + EX31_RS11435 0.76 -0.1
221,805 - EX31_RS11435 0.76 -2.2
221,805 - EX31_RS11435 0.76 -1.0
222,015 + -1.7
222,015 + -0.8
222,206 + EX31_RS11440 0.14 -1.0
222,268 + EX31_RS11440 0.19 +0.2
222,281 + EX31_RS11440 0.20 -3.2
222,317 + EX31_RS11440 0.23 -3.3
222,373 + EX31_RS11440 0.27 -3.0
222,398 + EX31_RS11440 0.29 -2.7
222,417 + EX31_RS11440 0.30 -2.6
222,419 + EX31_RS11440 0.30 -0.7
222,420 - EX31_RS11440 0.30 -2.9
222,454 + EX31_RS11440 0.33 -1.4
222,455 - EX31_RS11440 0.33 -1.4
222,457 + EX31_RS11440 0.33 -2.2
222,458 - EX31_RS11440 0.33 +0.6
222,458 - EX31_RS11440 0.33 -2.2
222,540 + EX31_RS11440 0.39 -2.9
222,574 - EX31_RS11440 0.42 -2.7
222,574 - EX31_RS11440 0.42 -2.6
222,666 + EX31_RS11440 0.49 -2.7
222,667 - EX31_RS11440 0.49 -3.7
222,667 - EX31_RS11440 0.49 -1.4
222,667 - EX31_RS11440 0.49 -1.3
222,667 - EX31_RS11440 0.49 -2.9
222,977 + EX31_RS11440 0.73 +0.6
222,977 + EX31_RS11440 0.73 -2.2
223,053 - EX31_RS11440 0.79 -1.0
223,111 - EX31_RS11440 0.83 -4.5
223,143 + EX31_RS11440 0.85 -0.7
223,144 - EX31_RS11440 0.85 -2.4
223,149 + EX31_RS11440 0.86 -2.6
223,244 + -1.0
223,375 + -1.6
223,375 + +0.0
223,376 - -1.4
223,376 - -1.7
223,457 + EX31_RS11445 0.11 -1.4
223,550 + EX31_RS11445 0.19 -2.9
223,550 + EX31_RS11445 0.19 -1.7
223,679 + EX31_RS11445 0.30 -2.4
223,679 + EX31_RS11445 0.30 -2.0
223,680 - EX31_RS11445 0.31 +0.6
223,680 - EX31_RS11445 0.31 -1.7
223,680 - EX31_RS11445 0.31 -3.5
223,680 - EX31_RS11445 0.31 -0.4
223,680 - EX31_RS11445 0.31 -1.4
223,793 + EX31_RS11445 0.40 -1.2
223,793 + EX31_RS11445 0.40 +0.0
223,825 + EX31_RS11445 0.43 -3.0
223,884 + EX31_RS11445 0.49 -1.0
223,901 + EX31_RS11445 0.50 -2.6
223,901 + EX31_RS11445 0.50 +0.6
223,901 + EX31_RS11445 0.50 -3.5
223,901 + EX31_RS11445 0.50 -2.0
223,901 + EX31_RS11445 0.50 -0.6
223,901 + EX31_RS11445 0.50 +0.6
223,901 + EX31_RS11445 0.50 -0.8
223,901 + EX31_RS11445 0.50 -1.5
223,902 - EX31_RS11445 0.50 -2.9
223,902 - EX31_RS11445 0.50 -2.4
223,902 - EX31_RS11445 0.50 -2.4
223,903 + EX31_RS11445 0.50 -0.4
223,904 - EX31_RS11445 0.50 -1.0
224,046 + EX31_RS11445 0.63 -1.4
224,046 + EX31_RS11445 0.63 -2.4
224,047 - EX31_RS11445 0.63 -0.4
224,050 - EX31_RS11445 0.63 -3.7
224,070 - EX31_RS11445 0.65 -1.6
224,076 + EX31_RS11445 0.65 -1.0
224,080 + EX31_RS11445 0.66 +0.6
224,081 - EX31_RS11445 0.66 -1.6
224,233 + EX31_RS11445 0.79 -2.6
224,233 + EX31_RS11445 0.79 -2.7
224,234 - EX31_RS11445 0.79 -2.6
224,234 - EX31_RS11445 0.79 -2.0
224,234 - EX31_RS11445 0.79 -2.4
224,237 + EX31_RS11445 0.80 -3.0
224,237 + EX31_RS11445 0.80 +0.6
224,237 + EX31_RS11445 0.80 +0.6
224,238 - EX31_RS11445 0.80 -1.0
224,238 - EX31_RS11445 0.80 -1.7
224,238 - EX31_RS11445 0.80 -2.9
224,255 + EX31_RS11445 0.81 -0.4
224,255 + EX31_RS11445 0.81 -2.2
224,276 - EX31_RS11445 0.83 -2.7

Or see this region's nucleotide sequence