Strain Fitness in Rahnella sp. WP5 around EX31_RS07595

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07590 and EX31_RS07595 are separated by 6 nucleotidesEX31_RS07595 and EX31_RS07600 are separated by 288 nucleotides EX31_RS07590: EX31_RS07590 - bifunctional chorismate mutase/prephenate dehydrogenase, at 7,666 to 8,787 _RS07590 EX31_RS07595: EX31_RS07595 - 3-deoxy-7-phosphoheptulonate synthase, at 8,794 to 9,870 _RS07595 EX31_RS07600: EX31_RS07600 - hypothetical protein, at 10,159 to 10,749 _RS07600 Position (kb) 8 9 10Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 7.867 kb on - strand, within EX31_RS07590at 7.870 kb on - strand, within EX31_RS07590at 7.870 kb on - strand, within EX31_RS07590at 7.870 kb on - strand, within EX31_RS07590at 8.074 kb on - strand, within EX31_RS07590at 8.148 kb on - strand, within EX31_RS07590at 8.194 kb on - strand, within EX31_RS07590at 8.281 kb on - strand, within EX31_RS07590at 8.281 kb on - strand, within EX31_RS07590at 8.567 kb on - strand, within EX31_RS07590at 8.567 kb on - strand, within EX31_RS07590at 8.655 kb on - strand, within EX31_RS07590at 8.729 kb on - strandat 8.878 kb on - strandat 8.878 kb on - strandat 8.893 kb on - strandat 8.907 kb on - strand, within EX31_RS07595at 8.907 kb on - strand, within EX31_RS07595at 8.907 kb on - strand, within EX31_RS07595at 8.907 kb on - strand, within EX31_RS07595at 8.907 kb on - strand, within EX31_RS07595at 8.907 kb on - strand, within EX31_RS07595at 9.061 kb on - strand, within EX31_RS07595at 9.077 kb on - strand, within EX31_RS07595at 9.077 kb on - strand, within EX31_RS07595at 9.077 kb on - strand, within EX31_RS07595at 9.147 kb on - strand, within EX31_RS07595at 9.410 kb on - strand, within EX31_RS07595at 9.410 kb on - strand, within EX31_RS07595at 9.410 kb on - strand, within EX31_RS07595at 9.410 kb on - strand, within EX31_RS07595at 9.410 kb on - strand, within EX31_RS07595at 9.410 kb on - strand, within EX31_RS07595at 9.410 kb on - strand, within EX31_RS07595at 9.410 kb on - strand, within EX31_RS07595at 9.414 kb on - strand, within EX31_RS07595at 9.414 kb on - strand, within EX31_RS07595at 9.544 kb on - strand, within EX31_RS07595at 9.544 kb on - strand, within EX31_RS07595at 9.548 kb on - strand, within EX31_RS07595at 9.548 kb on - strand, within EX31_RS07595at 9.548 kb on - strand, within EX31_RS07595at 9.606 kb on - strand, within EX31_RS07595at 9.606 kb on - strand, within EX31_RS07595at 9.606 kb on - strand, within EX31_RS07595at 9.606 kb on - strand, within EX31_RS07595at 9.748 kb on - strand, within EX31_RS07595at 9.748 kb on - strand, within EX31_RS07595at 9.763 kb on - strandat 9.841 kb on - strandat 9.841 kb on - strandat 9.841 kb on - strandat 9.850 kb on - strandat 9.886 kb on + strandat 9.887 kb on - strandat 9.887 kb on - strandat 9.928 kb on - strandat 9.988 kb on + strandat 9.990 kb on + strandat 9.990 kb on + strandat 9.990 kb on + strandat 9.990 kb on + strandat 9.990 kb on + strandat 9.990 kb on + strandat 9.990 kb on + strandat 9.990 kb on + strandat 9.990 kb on + strandat 9.990 kb on + strandat 9.990 kb on + strandat 9.990 kb on + strandat 9.990 kb on + strandat 9.991 kb on - strandat 9.991 kb on - strandat 9.991 kb on - strandat 9.991 kb on - strandat 9.991 kb on - strandat 9.991 kb on - strandat 9.991 kb on - strandat 9.991 kb on - strandat 9.991 kb on - strandat 9.991 kb on - strandat 9.991 kb on - strandat 9.991 kb on - strandat 9.991 kb on - strandat 9.991 kb on - strandat 9.991 kb on - strandat 9.991 kb on - strandat 9.991 kb on - strandat 9.991 kb on - strandat 9.991 kb on - strandat 10.161 kb on - strandat 10.816 kb on - strandat 10.820 kb on - strandat 10.820 kb on - strandat 10.820 kb on - strandat 10.844 kb on - strandat 10.844 kb on - strandat 10.870 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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7,867 - EX31_RS07590 0.18 -1.0
7,870 - EX31_RS07590 0.18 -1.0
7,870 - EX31_RS07590 0.18 +0.0
7,870 - EX31_RS07590 0.18 -1.5
8,074 - EX31_RS07590 0.36 -2.0
8,148 - EX31_RS07590 0.43 -1.5
8,194 - EX31_RS07590 0.47 +0.0
8,281 - EX31_RS07590 0.55 -1.3
8,281 - EX31_RS07590 0.55 +1.0
8,567 - EX31_RS07590 0.80 -2.0
8,567 - EX31_RS07590 0.80 -1.5
8,655 - EX31_RS07590 0.88 -0.5
8,729 - -2.7
8,878 - -2.1
8,878 - +1.0
8,893 - +0.2
8,907 - EX31_RS07595 0.10 +0.0
8,907 - EX31_RS07595 0.10 -0.7
8,907 - EX31_RS07595 0.10 -3.0
8,907 - EX31_RS07595 0.10 -1.2
8,907 - EX31_RS07595 0.10 -2.9
8,907 - EX31_RS07595 0.10 +1.0
9,061 - EX31_RS07595 0.25 -2.8
9,077 - EX31_RS07595 0.26 -1.8
9,077 - EX31_RS07595 0.26 -1.7
9,077 - EX31_RS07595 0.26 -0.8
9,147 - EX31_RS07595 0.33 -0.8
9,410 - EX31_RS07595 0.57 -2.4
9,410 - EX31_RS07595 0.57 -1.5
9,410 - EX31_RS07595 0.57 +1.0
9,410 - EX31_RS07595 0.57 -0.4
9,410 - EX31_RS07595 0.57 -2.4
9,410 - EX31_RS07595 0.57 -2.5
9,410 - EX31_RS07595 0.57 -0.7
9,410 - EX31_RS07595 0.57 -3.9
9,414 - EX31_RS07595 0.58 -1.9
9,414 - EX31_RS07595 0.58 -1.5
9,544 - EX31_RS07595 0.70 +0.0
9,544 - EX31_RS07595 0.70 -1.5
9,548 - EX31_RS07595 0.70 +0.8
9,548 - EX31_RS07595 0.70 -2.1
9,548 - EX31_RS07595 0.70 -0.5
9,606 - EX31_RS07595 0.75 -0.5
9,606 - EX31_RS07595 0.75 -0.5
9,606 - EX31_RS07595 0.75 -2.0
9,606 - EX31_RS07595 0.75 -0.6
9,748 - EX31_RS07595 0.89 +2.0
9,748 - EX31_RS07595 0.89 +0.0
9,763 - -1.0
9,841 - -0.5
9,841 - -3.0
9,841 - -1.3
9,850 - -3.2
9,886 + -3.0
9,887 - +0.4
9,887 - -0.8
9,928 - -1.0
9,988 + +3.0
9,990 + +0.0
9,990 + -0.3
9,990 + +0.2
9,990 + +1.3
9,990 + +0.8
9,990 + +0.2
9,990 + -1.8
9,990 + -0.1
9,990 + +1.3
9,990 + -0.4
9,990 + -0.1
9,990 + +3.0
9,990 + -0.8
9,991 - +0.3
9,991 - -0.1
9,991 - +0.5
9,991 - +0.3
9,991 - -0.1
9,991 - -0.4
9,991 - -2.0
9,991 - -0.2
9,991 - +0.8
9,991 - +0.7
9,991 - -0.3
9,991 - +0.2
9,991 - +1.0
9,991 - -0.7
9,991 - -0.4
9,991 - +0.6
9,991 - +0.2
9,991 - +0.0
9,991 - -1.4
10,161 - +0.9
10,816 - +0.0
10,820 - -0.7
10,820 - +1.0
10,820 - +0.1
10,844 - -0.5
10,844 - -0.4
10,870 + -0.2

Or see this region's nucleotide sequence