Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS25175 and CA265_RS25180 are separated by 104 nucleotides CA265_RS25180 and CA265_RS25185 are separated by 365 nucleotides
CA265_RS25175: CA265_RS25175 - EamA family transporter, at 6,128,883 to 6,129,788
_RS25175
CA265_RS25180: CA265_RS25180 - hypothetical protein, at 6,129,893 to 6,130,456
_RS25180
CA265_RS25185: CA265_RS25185 - glycine dehydrogenase (aminomethyl-transferring), at 6,130,822 to 6,133,698
_RS25185
Position (kb)
6129
6130
6131 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6128.939 kb on + strand at 6128.949 kb on - strand at 6128.972 kb on + strand at 6128.973 kb on - strand at 6129.131 kb on - strand, within CA265_RS25175 at 6129.131 kb on - strand, within CA265_RS25175 at 6129.147 kb on + strand, within CA265_RS25175 at 6129.229 kb on - strand, within CA265_RS25175 at 6129.260 kb on - strand at 6129.364 kb on + strand, within CA265_RS25175 at 6129.423 kb on + strand, within CA265_RS25175 at 6129.423 kb on + strand, within CA265_RS25175 at 6129.429 kb on - strand, within CA265_RS25175 at 6129.517 kb on + strand, within CA265_RS25175 at 6129.599 kb on - strand, within CA265_RS25175 at 6129.631 kb on + strand, within CA265_RS25175 at 6129.632 kb on - strand, within CA265_RS25175 at 6129.677 kb on - strand, within CA265_RS25175 at 6129.792 kb on + strand at 6129.794 kb on + strand at 6129.795 kb on - strand at 6129.815 kb on + strand at 6129.815 kb on + strand at 6129.889 kb on - strand at 6129.907 kb on + strand at 6129.913 kb on + strand at 6130.025 kb on - strand, within CA265_RS25180 at 6130.025 kb on - strand, within CA265_RS25180 at 6130.054 kb on - strand, within CA265_RS25180 at 6130.067 kb on - strand, within CA265_RS25180 at 6130.076 kb on - strand, within CA265_RS25180 at 6130.182 kb on - strand, within CA265_RS25180 at 6130.195 kb on - strand, within CA265_RS25180 at 6130.237 kb on + strand, within CA265_RS25180 at 6130.238 kb on - strand, within CA265_RS25180 at 6130.262 kb on + strand, within CA265_RS25180 at 6130.304 kb on - strand, within CA265_RS25180 at 6130.426 kb on + strand at 6130.426 kb on + strand at 6130.486 kb on - strand at 6130.502 kb on + strand at 6130.513 kb on + strand at 6130.574 kb on + strand at 6130.575 kb on - strand at 6130.630 kb on - strand at 6130.652 kb on + strand at 6130.704 kb on - strand at 6130.711 kb on - strand at 6130.728 kb on + strand at 6130.739 kb on - strand at 6130.761 kb on - strand at 6130.761 kb on - strand at 6131.085 kb on + strand at 6131.138 kb on - strand, within CA265_RS25185
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 6,128,939 + +1.0 6,128,949 - +0.5 6,128,972 + -0.1 6,128,973 - -0.4 6,129,131 - CA265_RS25175 0.27 -1.1 6,129,131 - CA265_RS25175 0.27 -0.2 6,129,147 + CA265_RS25175 0.29 -0.2 6,129,229 - CA265_RS25175 0.38 -1.1 6,129,260 - +0.9 6,129,364 + CA265_RS25175 0.53 -1.5 6,129,423 + CA265_RS25175 0.60 +0.7 6,129,423 + CA265_RS25175 0.60 +1.2 6,129,429 - CA265_RS25175 0.60 -2.1 6,129,517 + CA265_RS25175 0.70 +0.1 6,129,599 - CA265_RS25175 0.79 +0.3 6,129,631 + CA265_RS25175 0.83 +0.9 6,129,632 - CA265_RS25175 0.83 -0.4 6,129,677 - CA265_RS25175 0.88 +1.2 6,129,792 + +0.0 6,129,794 + +0.3 6,129,795 - +0.3 6,129,815 + +1.9 6,129,815 + +0.4 6,129,889 - +0.1 6,129,907 + +1.2 6,129,913 + +0.6 6,130,025 - CA265_RS25180 0.23 -1.0 6,130,025 - CA265_RS25180 0.23 -0.2 6,130,054 - CA265_RS25180 0.29 +1.2 6,130,067 - CA265_RS25180 0.31 +0.2 6,130,076 - CA265_RS25180 0.32 -0.1 6,130,182 - CA265_RS25180 0.51 +0.4 6,130,195 - CA265_RS25180 0.54 -0.3 6,130,237 + CA265_RS25180 0.61 +0.5 6,130,238 - CA265_RS25180 0.61 +0.4 6,130,262 + CA265_RS25180 0.65 +0.5 6,130,304 - CA265_RS25180 0.73 +0.1 6,130,426 + +0.4 6,130,426 + +1.6 6,130,486 - +0.1 6,130,502 + +0.0 6,130,513 + -0.4 6,130,574 + +0.2 6,130,575 - -1.1 6,130,630 - +0.3 6,130,652 + +1.6 6,130,704 - -0.8 6,130,711 - -1.5 6,130,728 + +1.1 6,130,739 - -0.5 6,130,761 - -2.2 6,130,761 - +0.2 6,131,085 + -0.1 6,131,138 - CA265_RS25185 0.11 -1.5
Or see this region's nucleotide sequence