Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23065

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS23055 and CA265_RS23060 are separated by 252 nucleotidesCA265_RS23060 and CA265_RS23065 are separated by 17 nucleotidesCA265_RS23065 and CA265_RS23070 are separated by 78 nucleotides CA265_RS23055: CA265_RS23055 - GxxExxY protein, at 5,644,991 to 5,645,398 _RS23055 CA265_RS23060: CA265_RS23060 - succinate dehydrogenase, at 5,645,651 to 5,646,331 _RS23060 CA265_RS23065: CA265_RS23065 - succinate dehydrogenase flavoprotein subunit, at 5,646,349 to 5,648,328 _RS23065 CA265_RS23070: CA265_RS23070 - fumarate reductase, at 5,648,407 to 5,649,177 _RS23070 Position (kb) 5646 5647 5648 5649Strain fitness (log2 ratio) -2 -1 0 1 2at 5645.350 kb on + strand, within CA265_RS23055at 5645.353 kb on - strand, within CA265_RS23055at 5645.401 kb on + strandat 5645.402 kb on - strandat 5645.405 kb on - strandat 5645.428 kb on + strandat 5645.429 kb on - strandat 5645.493 kb on - strandat 5645.606 kb on + strandat 5645.610 kb on + strandat 5645.637 kb on + strandat 5645.637 kb on + strandat 5648.326 kb on + strandat 5648.326 kb on + strandat 5649.268 kb on - strandat 5649.268 kb on - strandat 5649.290 kb on - strandat 5649.290 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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5,645,350 + CA265_RS23055 0.88 -0.1
5,645,353 - CA265_RS23055 0.89 -0.0
5,645,401 + -0.2
5,645,402 - +1.6
5,645,405 - +0.2
5,645,428 + -1.0
5,645,429 - +0.4
5,645,493 - +0.9
5,645,606 + -2.3
5,645,610 + -2.1
5,645,637 + +1.1
5,645,637 + +1.8
5,648,326 + +0.2
5,648,326 + -1.9
5,649,268 - -0.6
5,649,268 - +0.9
5,649,290 - +0.3
5,649,290 - +0.5

Or see this region's nucleotide sequence