Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS19160 and CA265_RS19165 are separated by 149 nucleotides CA265_RS19165 and CA265_RS19170 are separated by 62 nucleotides
CA265_RS19160: CA265_RS19160 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 4,761,105 to 4,762,943
_RS19160
CA265_RS19165: CA265_RS19165 - serine hydroxymethyltransferase, at 4,763,093 to 4,764,364
_RS19165
CA265_RS19170: CA265_RS19170 - chromosome segregation protein ScpA, at 4,764,427 to 4,765,170
_RS19170
Position (kb) 4763
4764
4765 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4762.974 kb on - strand at 4762.974 kb on - strand at 4763.016 kb on + strand at 4763.036 kb on + strand at 4763.048 kb on + strand at 4763.086 kb on + strand at 4763.088 kb on + strand at 4763.088 kb on + strand at 4763.088 kb on + strand at 4763.094 kb on + strand at 4763.094 kb on + strand at 4763.094 kb on + strand at 4763.095 kb on - strand at 4763.117 kb on + strand at 4763.251 kb on + strand, within CA265_RS19165 at 4763.306 kb on - strand at 4763.407 kb on + strand, within CA265_RS19165 at 4763.488 kb on - strand, within CA265_RS19165 at 4763.488 kb on - strand, within CA265_RS19165 at 4763.722 kb on + strand, within CA265_RS19165 at 4763.960 kb on + strand, within CA265_RS19165 at 4764.117 kb on - strand, within CA265_RS19165 at 4764.260 kb on + strand at 4764.269 kb on - strand at 4764.272 kb on + strand at 4764.335 kb on - strand at 4764.418 kb on + strand at 4764.448 kb on - strand at 4764.540 kb on + strand, within CA265_RS19170 at 4764.541 kb on - strand, within CA265_RS19170 at 4764.583 kb on - strand, within CA265_RS19170 at 4764.586 kb on - strand, within CA265_RS19170 at 4764.630 kb on + strand, within CA265_RS19170 at 4764.631 kb on - strand, within CA265_RS19170 at 4764.632 kb on + strand, within CA265_RS19170 at 4764.633 kb on - strand, within CA265_RS19170 at 4764.651 kb on + strand, within CA265_RS19170 at 4764.680 kb on + strand, within CA265_RS19170 at 4764.717 kb on + strand, within CA265_RS19170 at 4764.719 kb on + strand, within CA265_RS19170 at 4764.789 kb on + strand, within CA265_RS19170 at 4764.790 kb on - strand, within CA265_RS19170 at 4764.874 kb on + strand, within CA265_RS19170 at 4764.904 kb on - strand, within CA265_RS19170 at 4764.925 kb on + strand, within CA265_RS19170 at 4765.007 kb on - strand, within CA265_RS19170 at 4765.032 kb on + strand, within CA265_RS19170 at 4765.033 kb on - strand, within CA265_RS19170 at 4765.035 kb on - strand, within CA265_RS19170 at 4765.035 kb on - strand, within CA265_RS19170 at 4765.083 kb on + strand, within CA265_RS19170 at 4765.084 kb on - strand, within CA265_RS19170 at 4765.292 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 4,762,974 - -0.6 4,762,974 - -0.8 4,763,016 + -0.2 4,763,036 + +1.4 4,763,048 + -1.0 4,763,086 + +2.9 4,763,088 + +0.7 4,763,088 + +1.2 4,763,088 + +0.4 4,763,094 + -0.8 4,763,094 + -0.1 4,763,094 + +1.0 4,763,095 - +0.9 4,763,117 + -0.3 4,763,251 + CA265_RS19165 0.12 -3.3 4,763,306 - -0.6 4,763,407 + CA265_RS19165 0.25 -2.7 4,763,488 - CA265_RS19165 0.31 -2.4 4,763,488 - CA265_RS19165 0.31 -1.8 4,763,722 + CA265_RS19165 0.49 -2.8 4,763,960 + CA265_RS19165 0.68 -0.8 4,764,117 - CA265_RS19165 0.81 -0.6 4,764,260 + -4.4 4,764,269 - -1.0 4,764,272 + +0.0 4,764,335 - -1.1 4,764,418 + -0.0 4,764,448 - +0.6 4,764,540 + CA265_RS19170 0.15 -0.3 4,764,541 - CA265_RS19170 0.15 +0.8 4,764,583 - CA265_RS19170 0.21 -0.3 4,764,586 - CA265_RS19170 0.21 -0.9 4,764,630 + CA265_RS19170 0.27 -0.0 4,764,631 - CA265_RS19170 0.27 -0.5 4,764,632 + CA265_RS19170 0.28 +0.9 4,764,633 - CA265_RS19170 0.28 +0.1 4,764,651 + CA265_RS19170 0.30 +0.2 4,764,680 + CA265_RS19170 0.34 -1.1 4,764,717 + CA265_RS19170 0.39 -0.1 4,764,719 + CA265_RS19170 0.39 -1.9 4,764,789 + CA265_RS19170 0.49 +2.4 4,764,790 - CA265_RS19170 0.49 +0.4 4,764,874 + CA265_RS19170 0.60 +0.1 4,764,904 - CA265_RS19170 0.64 -2.1 4,764,925 + CA265_RS19170 0.67 +0.2 4,765,007 - CA265_RS19170 0.78 +0.4 4,765,032 + CA265_RS19170 0.81 +0.5 4,765,033 - CA265_RS19170 0.81 +0.0 4,765,035 - CA265_RS19170 0.82 -0.9 4,765,035 - CA265_RS19170 0.82 +0.6 4,765,083 + CA265_RS19170 0.88 -0.6 4,765,084 - CA265_RS19170 0.88 +0.8 4,765,292 - -0.2
Or see this region's nucleotide sequence