Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19280

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19275 and BPHYT_RS19280 are separated by 9 nucleotidesBPHYT_RS19280 and BPHYT_RS19285 are separated by 14 nucleotides BPHYT_RS19275: BPHYT_RS19275 - hypothetical protein, at 4,326,072 to 4,326,908 _RS19275 BPHYT_RS19280: BPHYT_RS19280 - integrase, at 4,326,918 to 4,329,800 _RS19280 BPHYT_RS19285: BPHYT_RS19285 - hypothetical protein, at 4,329,815 to 4,330,804 _RS19285 Position (kb) 4326 4327 4328 4329 4330Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4326.050 kb on + strandat 4326.068 kb on + strandat 4326.068 kb on + strandat 4326.388 kb on + strand, within BPHYT_RS19275at 4326.389 kb on - strand, within BPHYT_RS19275at 4326.399 kb on + strand, within BPHYT_RS19275at 4326.400 kb on - strand, within BPHYT_RS19275at 4326.450 kb on + strand, within BPHYT_RS19275at 4326.450 kb on + strand, within BPHYT_RS19275at 4326.465 kb on - strand, within BPHYT_RS19275at 4326.770 kb on - strand, within BPHYT_RS19275at 4326.935 kb on + strandat 4327.020 kb on + strandat 4327.083 kb on + strandat 4327.083 kb on + strandat 4327.083 kb on + strandat 4327.084 kb on - strandat 4327.085 kb on + strandat 4327.254 kb on + strand, within BPHYT_RS19280at 4327.257 kb on + strand, within BPHYT_RS19280at 4327.278 kb on - strand, within BPHYT_RS19280at 4327.282 kb on + strand, within BPHYT_RS19280at 4327.326 kb on + strand, within BPHYT_RS19280at 4327.326 kb on + strand, within BPHYT_RS19280at 4327.327 kb on - strand, within BPHYT_RS19280at 4327.329 kb on + strand, within BPHYT_RS19280at 4327.329 kb on + strand, within BPHYT_RS19280at 4327.330 kb on - strand, within BPHYT_RS19280at 4327.330 kb on - strand, within BPHYT_RS19280at 4327.347 kb on + strand, within BPHYT_RS19280at 4327.386 kb on + strand, within BPHYT_RS19280at 4327.386 kb on + strand, within BPHYT_RS19280at 4327.386 kb on + strand, within BPHYT_RS19280at 4327.386 kb on + strand, within BPHYT_RS19280at 4327.386 kb on + strand, within BPHYT_RS19280at 4327.386 kb on + strand, within BPHYT_RS19280at 4327.386 kb on + strand, within BPHYT_RS19280at 4327.386 kb on + strand, within BPHYT_RS19280at 4327.386 kb on + strand, within BPHYT_RS19280at 4327.387 kb on - strand, within BPHYT_RS19280at 4327.387 kb on - strand, within BPHYT_RS19280at 4327.387 kb on - strand, within BPHYT_RS19280at 4327.599 kb on - strand, within BPHYT_RS19280at 4327.646 kb on + strand, within BPHYT_RS19280at 4327.647 kb on - strand, within BPHYT_RS19280at 4327.770 kb on + strand, within BPHYT_RS19280at 4327.770 kb on + strand, within BPHYT_RS19280at 4327.770 kb on + strand, within BPHYT_RS19280at 4327.771 kb on - strand, within BPHYT_RS19280at 4327.771 kb on - strand, within BPHYT_RS19280at 4327.771 kb on - strand, within BPHYT_RS19280at 4327.925 kb on + strand, within BPHYT_RS19280at 4327.925 kb on + strand, within BPHYT_RS19280at 4327.935 kb on - strand, within BPHYT_RS19280at 4328.093 kb on - strand, within BPHYT_RS19280at 4328.159 kb on + strand, within BPHYT_RS19280at 4328.159 kb on + strand, within BPHYT_RS19280at 4328.264 kb on - strand, within BPHYT_RS19280at 4328.484 kb on + strand, within BPHYT_RS19280at 4328.484 kb on + strandat 4328.513 kb on - strand, within BPHYT_RS19280at 4328.541 kb on + strand, within BPHYT_RS19280at 4328.542 kb on - strand, within BPHYT_RS19280at 4328.542 kb on - strand, within BPHYT_RS19280at 4328.544 kb on - strand, within BPHYT_RS19280at 4328.566 kb on - strand, within BPHYT_RS19280at 4328.587 kb on + strand, within BPHYT_RS19280at 4328.587 kb on + strand, within BPHYT_RS19280at 4328.588 kb on - strand, within BPHYT_RS19280at 4328.588 kb on - strand, within BPHYT_RS19280at 4328.588 kb on - strand, within BPHYT_RS19280at 4328.588 kb on - strand, within BPHYT_RS19280at 4328.619 kb on - strand, within BPHYT_RS19280at 4328.728 kb on + strand, within BPHYT_RS19280at 4328.739 kb on + strand, within BPHYT_RS19280at 4328.740 kb on - strand, within BPHYT_RS19280at 4328.759 kb on + strandat 4328.759 kb on + strand, within BPHYT_RS19280at 4328.759 kb on + strand, within BPHYT_RS19280at 4328.760 kb on - strand, within BPHYT_RS19280at 4328.760 kb on - strand, within BPHYT_RS19280at 4328.760 kb on - strand, within BPHYT_RS19280at 4329.007 kb on + strand, within BPHYT_RS19280at 4329.096 kb on + strand, within BPHYT_RS19280at 4329.111 kb on + strand, within BPHYT_RS19280at 4329.112 kb on - strand, within BPHYT_RS19280at 4329.149 kb on + strand, within BPHYT_RS19280at 4329.156 kb on + strandat 4329.157 kb on - strand, within BPHYT_RS19280at 4329.157 kb on - strand, within BPHYT_RS19280at 4329.157 kb on - strand, within BPHYT_RS19280at 4329.219 kb on + strand, within BPHYT_RS19280at 4329.219 kb on + strand, within BPHYT_RS19280at 4329.220 kb on - strand, within BPHYT_RS19280at 4329.225 kb on + strand, within BPHYT_RS19280at 4329.225 kb on + strand, within BPHYT_RS19280at 4329.226 kb on - strand, within BPHYT_RS19280at 4329.260 kb on + strand, within BPHYT_RS19280at 4329.289 kb on + strand, within BPHYT_RS19280at 4329.382 kb on + strand, within BPHYT_RS19280at 4329.382 kb on + strand, within BPHYT_RS19280at 4329.383 kb on - strand, within BPHYT_RS19280at 4329.448 kb on - strand, within BPHYT_RS19280at 4329.462 kb on + strand, within BPHYT_RS19280at 4329.463 kb on - strand, within BPHYT_RS19280at 4329.477 kb on + strand, within BPHYT_RS19280at 4329.477 kb on + strand, within BPHYT_RS19280at 4329.477 kb on + strand, within BPHYT_RS19280at 4329.477 kb on + strand, within BPHYT_RS19280at 4329.478 kb on - strand, within BPHYT_RS19280at 4329.478 kb on - strand, within BPHYT_RS19280at 4329.486 kb on + strand, within BPHYT_RS19280at 4329.486 kb on + strand, within BPHYT_RS19280at 4329.487 kb on - strand, within BPHYT_RS19280at 4329.487 kb on - strand, within BPHYT_RS19280at 4329.487 kb on - strand, within BPHYT_RS19280at 4329.487 kb on - strand, within BPHYT_RS19280at 4329.768 kb on + strandat 4329.769 kb on - strandat 4329.769 kb on - strandat 4329.814 kb on + strandat 4329.815 kb on - strandat 4329.815 kb on - strandat 4329.844 kb on - strandat 4329.893 kb on - strandat 4329.893 kb on - strandat 4329.937 kb on + strand, within BPHYT_RS19285at 4329.937 kb on + strand, within BPHYT_RS19285at 4329.938 kb on - strand, within BPHYT_RS19285at 4329.938 kb on - strand, within BPHYT_RS19285at 4329.938 kb on - strand, within BPHYT_RS19285at 4329.964 kb on + strand, within BPHYT_RS19285at 4329.965 kb on - strand, within BPHYT_RS19285at 4329.965 kb on - strand, within BPHYT_RS19285at 4330.030 kb on - strand, within BPHYT_RS19285at 4330.041 kb on - strand, within BPHYT_RS19285at 4330.041 kb on - strand, within BPHYT_RS19285at 4330.047 kb on + strand, within BPHYT_RS19285at 4330.048 kb on - strand, within BPHYT_RS19285at 4330.048 kb on - strandat 4330.136 kb on + strand, within BPHYT_RS19285at 4330.209 kb on + strand, within BPHYT_RS19285at 4330.210 kb on - strand, within BPHYT_RS19285at 4330.210 kb on - strand, within BPHYT_RS19285at 4330.223 kb on - strand, within BPHYT_RS19285at 4330.223 kb on - strand, within BPHYT_RS19285at 4330.278 kb on + strand, within BPHYT_RS19285at 4330.279 kb on - strand, within BPHYT_RS19285at 4330.326 kb on + strand, within BPHYT_RS19285at 4330.326 kb on + strand, within BPHYT_RS19285at 4330.327 kb on - strand, within BPHYT_RS19285at 4330.377 kb on + strand, within BPHYT_RS19285at 4330.377 kb on + strand, within BPHYT_RS19285at 4330.383 kb on + strand, within BPHYT_RS19285at 4330.383 kb on + strand, within BPHYT_RS19285at 4330.384 kb on - strand, within BPHYT_RS19285at 4330.384 kb on - strand, within BPHYT_RS19285at 4330.391 kb on + strand, within BPHYT_RS19285at 4330.392 kb on - strand, within BPHYT_RS19285at 4330.504 kb on + strand, within BPHYT_RS19285at 4330.504 kb on + strand, within BPHYT_RS19285at 4330.505 kb on - strand, within BPHYT_RS19285at 4330.560 kb on - strand, within BPHYT_RS19285at 4330.560 kb on - strand, within BPHYT_RS19285at 4330.577 kb on + strand, within BPHYT_RS19285at 4330.673 kb on + strand, within BPHYT_RS19285at 4330.673 kb on + strand, within BPHYT_RS19285at 4330.674 kb on - strand, within BPHYT_RS19285at 4330.674 kb on - strand, within BPHYT_RS19285at 4330.757 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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4,326,050 + -0.5
4,326,068 + -2.5
4,326,068 + +0.8
4,326,388 + BPHYT_RS19275 0.38 +0.5
4,326,389 - BPHYT_RS19275 0.38 +1.3
4,326,399 + BPHYT_RS19275 0.39 +2.0
4,326,400 - BPHYT_RS19275 0.39 -0.7
4,326,450 + BPHYT_RS19275 0.45 -0.3
4,326,450 + BPHYT_RS19275 0.45 +0.7
4,326,465 - BPHYT_RS19275 0.47 -1.0
4,326,770 - BPHYT_RS19275 0.83 -0.3
4,326,935 + -0.1
4,327,020 + +0.7
4,327,083 + +0.3
4,327,083 + +0.6
4,327,083 + +0.1
4,327,084 - +1.1
4,327,085 + +0.1
4,327,254 + BPHYT_RS19280 0.12 -0.5
4,327,257 + BPHYT_RS19280 0.12 -0.4
4,327,278 - BPHYT_RS19280 0.12 -1.1
4,327,282 + BPHYT_RS19280 0.13 +0.4
4,327,326 + BPHYT_RS19280 0.14 +2.3
4,327,326 + BPHYT_RS19280 0.14 +0.1
4,327,327 - BPHYT_RS19280 0.14 +0.7
4,327,329 + BPHYT_RS19280 0.14 +0.6
4,327,329 + BPHYT_RS19280 0.14 -0.2
4,327,330 - BPHYT_RS19280 0.14 -0.2
4,327,330 - BPHYT_RS19280 0.14 +0.4
4,327,347 + BPHYT_RS19280 0.15 +0.8
4,327,386 + BPHYT_RS19280 0.16 -0.1
4,327,386 + BPHYT_RS19280 0.16 +0.4
4,327,386 + BPHYT_RS19280 0.16 -0.6
4,327,386 + BPHYT_RS19280 0.16 -0.3
4,327,386 + BPHYT_RS19280 0.16 +1.3
4,327,386 + BPHYT_RS19280 0.16 +0.1
4,327,386 + BPHYT_RS19280 0.16 +0.9
4,327,386 + BPHYT_RS19280 0.16 +0.5
4,327,386 + BPHYT_RS19280 0.16 +0.5
4,327,387 - BPHYT_RS19280 0.16 +0.8
4,327,387 - BPHYT_RS19280 0.16 -1.4
4,327,387 - BPHYT_RS19280 0.16 +1.2
4,327,599 - BPHYT_RS19280 0.24 +0.9
4,327,646 + BPHYT_RS19280 0.25 +1.2
4,327,647 - BPHYT_RS19280 0.25 +0.7
4,327,770 + BPHYT_RS19280 0.30 +0.5
4,327,770 + BPHYT_RS19280 0.30 -1.0
4,327,770 + BPHYT_RS19280 0.30 -0.1
4,327,771 - BPHYT_RS19280 0.30 -0.5
4,327,771 - BPHYT_RS19280 0.30 -0.1
4,327,771 - BPHYT_RS19280 0.30 +0.4
4,327,925 + BPHYT_RS19280 0.35 +1.4
4,327,925 + BPHYT_RS19280 0.35 -0.0
4,327,935 - BPHYT_RS19280 0.35 +0.3
4,328,093 - BPHYT_RS19280 0.41 +0.5
4,328,159 + BPHYT_RS19280 0.43 -0.5
4,328,159 + BPHYT_RS19280 0.43 +0.8
4,328,264 - BPHYT_RS19280 0.47 -1.0
4,328,484 + BPHYT_RS19280 0.54 +1.0
4,328,484 + +0.4
4,328,513 - BPHYT_RS19280 0.55 -0.9
4,328,541 + BPHYT_RS19280 0.56 +0.1
4,328,542 - BPHYT_RS19280 0.56 +0.4
4,328,542 - BPHYT_RS19280 0.56 +1.1
4,328,544 - BPHYT_RS19280 0.56 -0.8
4,328,566 - BPHYT_RS19280 0.57 -1.1
4,328,587 + BPHYT_RS19280 0.58 +0.8
4,328,587 + BPHYT_RS19280 0.58 +0.2
4,328,588 - BPHYT_RS19280 0.58 +0.3
4,328,588 - BPHYT_RS19280 0.58 +0.1
4,328,588 - BPHYT_RS19280 0.58 +1.4
4,328,588 - BPHYT_RS19280 0.58 -0.0
4,328,619 - BPHYT_RS19280 0.59 +1.1
4,328,728 + BPHYT_RS19280 0.63 +0.2
4,328,739 + BPHYT_RS19280 0.63 +0.4
4,328,740 - BPHYT_RS19280 0.63 -2.8
4,328,759 + +2.4
4,328,759 + BPHYT_RS19280 0.64 +1.2
4,328,759 + BPHYT_RS19280 0.64 +0.6
4,328,760 - BPHYT_RS19280 0.64 -0.3
4,328,760 - BPHYT_RS19280 0.64 +0.7
4,328,760 - BPHYT_RS19280 0.64 +0.5
4,329,007 + BPHYT_RS19280 0.72 -1.6
4,329,096 + BPHYT_RS19280 0.76 -0.6
4,329,111 + BPHYT_RS19280 0.76 +1.0
4,329,112 - BPHYT_RS19280 0.76 +0.0
4,329,149 + BPHYT_RS19280 0.77 +1.4
4,329,156 + +0.8
4,329,157 - BPHYT_RS19280 0.78 +0.3
4,329,157 - BPHYT_RS19280 0.78 +0.0
4,329,157 - BPHYT_RS19280 0.78 -0.3
4,329,219 + BPHYT_RS19280 0.80 -0.8
4,329,219 + BPHYT_RS19280 0.80 +0.1
4,329,220 - BPHYT_RS19280 0.80 +0.6
4,329,225 + BPHYT_RS19280 0.80 -0.3
4,329,225 + BPHYT_RS19280 0.80 +1.8
4,329,226 - BPHYT_RS19280 0.80 +1.0
4,329,260 + BPHYT_RS19280 0.81 -0.4
4,329,289 + BPHYT_RS19280 0.82 -0.6
4,329,382 + BPHYT_RS19280 0.85 +0.1
4,329,382 + BPHYT_RS19280 0.85 -1.0
4,329,383 - BPHYT_RS19280 0.86 -0.4
4,329,448 - BPHYT_RS19280 0.88 -0.3
4,329,462 + BPHYT_RS19280 0.88 +1.4
4,329,463 - BPHYT_RS19280 0.88 -0.3
4,329,477 + BPHYT_RS19280 0.89 -0.2
4,329,477 + BPHYT_RS19280 0.89 -1.6
4,329,477 + BPHYT_RS19280 0.89 -0.3
4,329,477 + BPHYT_RS19280 0.89 -2.7
4,329,478 - BPHYT_RS19280 0.89 +1.5
4,329,478 - BPHYT_RS19280 0.89 +0.3
4,329,486 + BPHYT_RS19280 0.89 -0.6
4,329,486 + BPHYT_RS19280 0.89 +0.6
4,329,487 - BPHYT_RS19280 0.89 -0.2
4,329,487 - BPHYT_RS19280 0.89 +1.2
4,329,487 - BPHYT_RS19280 0.89 -0.7
4,329,487 - BPHYT_RS19280 0.89 +0.3
4,329,768 + +2.0
4,329,769 - -0.5
4,329,769 - +0.3
4,329,814 + +0.4
4,329,815 - -0.2
4,329,815 - -0.2
4,329,844 - -1.4
4,329,893 - -0.0
4,329,893 - +0.9
4,329,937 + BPHYT_RS19285 0.12 -1.9
4,329,937 + BPHYT_RS19285 0.12 -0.2
4,329,938 - BPHYT_RS19285 0.12 -0.7
4,329,938 - BPHYT_RS19285 0.12 -0.4
4,329,938 - BPHYT_RS19285 0.12 +0.4
4,329,964 + BPHYT_RS19285 0.15 +1.1
4,329,965 - BPHYT_RS19285 0.15 +0.5
4,329,965 - BPHYT_RS19285 0.15 +0.0
4,330,030 - BPHYT_RS19285 0.22 -0.9
4,330,041 - BPHYT_RS19285 0.23 -0.2
4,330,041 - BPHYT_RS19285 0.23 +0.1
4,330,047 + BPHYT_RS19285 0.23 +2.8
4,330,048 - BPHYT_RS19285 0.24 +0.5
4,330,048 - -0.6
4,330,136 + BPHYT_RS19285 0.32 +0.2
4,330,209 + BPHYT_RS19285 0.40 +0.5
4,330,210 - BPHYT_RS19285 0.40 -0.0
4,330,210 - BPHYT_RS19285 0.40 +0.1
4,330,223 - BPHYT_RS19285 0.41 +0.7
4,330,223 - BPHYT_RS19285 0.41 -1.7
4,330,278 + BPHYT_RS19285 0.47 +0.9
4,330,279 - BPHYT_RS19285 0.47 +1.9
4,330,326 + BPHYT_RS19285 0.52 +0.9
4,330,326 + BPHYT_RS19285 0.52 +0.7
4,330,327 - BPHYT_RS19285 0.52 -0.6
4,330,377 + BPHYT_RS19285 0.57 -0.3
4,330,377 + BPHYT_RS19285 0.57 +3.4
4,330,383 + BPHYT_RS19285 0.57 -0.3
4,330,383 + BPHYT_RS19285 0.57 +2.7
4,330,384 - BPHYT_RS19285 0.57 -0.2
4,330,384 - BPHYT_RS19285 0.57 +0.2
4,330,391 + BPHYT_RS19285 0.58 -0.5
4,330,392 - BPHYT_RS19285 0.58 +1.2
4,330,504 + BPHYT_RS19285 0.70 +0.5
4,330,504 + BPHYT_RS19285 0.70 -0.2
4,330,505 - BPHYT_RS19285 0.70 -0.4
4,330,560 - BPHYT_RS19285 0.75 -0.1
4,330,560 - BPHYT_RS19285 0.75 -1.4
4,330,577 + BPHYT_RS19285 0.77 +0.4
4,330,673 + BPHYT_RS19285 0.87 +0.3
4,330,673 + BPHYT_RS19285 0.87 -0.9
4,330,674 - BPHYT_RS19285 0.87 -0.4
4,330,674 - BPHYT_RS19285 0.87 -1.2
4,330,757 + -0.0

Or see this region's nucleotide sequence