Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18845

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS18840 and BPHYT_RS18845 are separated by 10 nucleotidesBPHYT_RS18845 and BPHYT_RS18850 are separated by 268 nucleotides BPHYT_RS18840: BPHYT_RS18840 - flagellar hook-associated protein FlgL, at 4,233,406 to 4,234,629 _RS18840 BPHYT_RS18845: BPHYT_RS18845 - flagellar hook-associated protein FlgK, at 4,234,640 to 4,236,613 _RS18845 BPHYT_RS18850: BPHYT_RS18850 - Flagellar brake protein YcgR 1, at 4,236,882 to 4,237,655 _RS18850 Position (kb) 4234 4235 4236 4237Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4233.792 kb on + strand, within BPHYT_RS18840at 4233.928 kb on - strand, within BPHYT_RS18840at 4233.929 kb on + strand, within BPHYT_RS18840at 4233.929 kb on + strand, within BPHYT_RS18840at 4233.929 kb on + strand, within BPHYT_RS18840at 4233.930 kb on - strand, within BPHYT_RS18840at 4233.930 kb on - strand, within BPHYT_RS18840at 4233.930 kb on - strand, within BPHYT_RS18840at 4233.960 kb on - strand, within BPHYT_RS18840at 4233.960 kb on - strand, within BPHYT_RS18840at 4233.960 kb on - strand, within BPHYT_RS18840at 4234.194 kb on - strand, within BPHYT_RS18840at 4234.229 kb on + strand, within BPHYT_RS18840at 4234.356 kb on + strand, within BPHYT_RS18840at 4234.356 kb on + strand, within BPHYT_RS18840at 4234.356 kb on + strand, within BPHYT_RS18840at 4234.377 kb on + strand, within BPHYT_RS18840at 4234.377 kb on + strand, within BPHYT_RS18840at 4234.446 kb on - strand, within BPHYT_RS18840at 4234.551 kb on - strandat 4234.599 kb on + strandat 4234.599 kb on + strandat 4234.600 kb on - strandat 4234.600 kb on - strandat 4234.608 kb on - strandat 4234.722 kb on + strandat 4234.723 kb on - strandat 4234.852 kb on + strand, within BPHYT_RS18845at 4234.863 kb on + strand, within BPHYT_RS18845at 4234.863 kb on + strand, within BPHYT_RS18845at 4235.091 kb on + strand, within BPHYT_RS18845at 4235.091 kb on + strand, within BPHYT_RS18845at 4235.092 kb on - strand, within BPHYT_RS18845at 4235.124 kb on + strand, within BPHYT_RS18845at 4235.124 kb on + strand, within BPHYT_RS18845at 4235.125 kb on - strand, within BPHYT_RS18845at 4235.197 kb on - strand, within BPHYT_RS18845at 4235.496 kb on + strand, within BPHYT_RS18845at 4235.497 kb on - strand, within BPHYT_RS18845at 4235.497 kb on - strand, within BPHYT_RS18845at 4235.511 kb on + strand, within BPHYT_RS18845at 4235.512 kb on - strand, within BPHYT_RS18845at 4235.512 kb on - strand, within BPHYT_RS18845at 4235.601 kb on + strand, within BPHYT_RS18845at 4235.844 kb on + strand, within BPHYT_RS18845at 4235.896 kb on + strand, within BPHYT_RS18845at 4235.898 kb on + strand, within BPHYT_RS18845at 4235.898 kb on + strand, within BPHYT_RS18845at 4235.899 kb on - strand, within BPHYT_RS18845at 4235.899 kb on - strand, within BPHYT_RS18845at 4235.899 kb on - strand, within BPHYT_RS18845at 4235.950 kb on - strand, within BPHYT_RS18845at 4236.065 kb on - strand, within BPHYT_RS18845at 4236.065 kb on - strand, within BPHYT_RS18845at 4236.065 kb on - strand, within BPHYT_RS18845at 4236.099 kb on + strand, within BPHYT_RS18845at 4236.276 kb on + strand, within BPHYT_RS18845at 4236.276 kb on + strand, within BPHYT_RS18845at 4236.277 kb on - strand, within BPHYT_RS18845at 4236.351 kb on + strand, within BPHYT_RS18845at 4236.352 kb on - strand, within BPHYT_RS18845at 4236.405 kb on + strand, within BPHYT_RS18845at 4236.405 kb on + strand, within BPHYT_RS18845at 4236.406 kb on - strand, within BPHYT_RS18845at 4236.415 kb on - strand, within BPHYT_RS18845at 4236.456 kb on + strandat 4236.456 kb on + strandat 4236.471 kb on + strandat 4236.472 kb on - strandat 4236.492 kb on + strandat 4236.493 kb on - strandat 4236.638 kb on + strandat 4236.639 kb on - strandat 4237.209 kb on + strand, within BPHYT_RS18850at 4237.209 kb on + strand, within BPHYT_RS18850at 4237.210 kb on - strand, within BPHYT_RS18850at 4237.210 kb on - strand, within BPHYT_RS18850at 4237.210 kb on - strand, within BPHYT_RS18850at 4237.210 kb on - strand, within BPHYT_RS18850at 4237.247 kb on - strand, within BPHYT_RS18850at 4237.264 kb on + strand, within BPHYT_RS18850at 4237.265 kb on - strand, within BPHYT_RS18850

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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4,233,792 + BPHYT_RS18840 0.32 -4.3
4,233,928 - BPHYT_RS18840 0.43 -2.0
4,233,929 + BPHYT_RS18840 0.43 -2.6
4,233,929 + BPHYT_RS18840 0.43 -4.1
4,233,929 + BPHYT_RS18840 0.43 -2.2
4,233,930 - BPHYT_RS18840 0.43 -3.9
4,233,930 - BPHYT_RS18840 0.43 -4.8
4,233,930 - BPHYT_RS18840 0.43 -1.2
4,233,960 - BPHYT_RS18840 0.45 -4.7
4,233,960 - BPHYT_RS18840 0.45 -4.1
4,233,960 - BPHYT_RS18840 0.45 -3.7
4,234,194 - BPHYT_RS18840 0.64 -3.4
4,234,229 + BPHYT_RS18840 0.67 +0.1
4,234,356 + BPHYT_RS18840 0.78 -0.6
4,234,356 + BPHYT_RS18840 0.78 -5.8
4,234,356 + BPHYT_RS18840 0.78 -4.4
4,234,377 + BPHYT_RS18840 0.79 +1.2
4,234,377 + BPHYT_RS18840 0.79 -4.7
4,234,446 - BPHYT_RS18840 0.85 -2.8
4,234,551 - -1.2
4,234,599 + -4.4
4,234,599 + -5.1
4,234,600 - -1.3
4,234,600 - -2.0
4,234,608 - -2.2
4,234,722 + -5.6
4,234,723 - -4.1
4,234,852 + BPHYT_RS18845 0.11 -6.5
4,234,863 + BPHYT_RS18845 0.11 -5.7
4,234,863 + BPHYT_RS18845 0.11 -5.3
4,235,091 + BPHYT_RS18845 0.23 -3.0
4,235,091 + BPHYT_RS18845 0.23 -2.9
4,235,092 - BPHYT_RS18845 0.23 -2.6
4,235,124 + BPHYT_RS18845 0.25 -4.9
4,235,124 + BPHYT_RS18845 0.25 -3.9
4,235,125 - BPHYT_RS18845 0.25 -1.7
4,235,197 - BPHYT_RS18845 0.28 -1.9
4,235,496 + BPHYT_RS18845 0.43 -5.5
4,235,497 - BPHYT_RS18845 0.43 -4.5
4,235,497 - BPHYT_RS18845 0.43 -4.1
4,235,511 + BPHYT_RS18845 0.44 -5.0
4,235,512 - BPHYT_RS18845 0.44 -0.6
4,235,512 - BPHYT_RS18845 0.44 -3.6
4,235,601 + BPHYT_RS18845 0.49 -4.4
4,235,844 + BPHYT_RS18845 0.61 -1.6
4,235,896 + BPHYT_RS18845 0.64 -2.8
4,235,898 + BPHYT_RS18845 0.64 -3.2
4,235,898 + BPHYT_RS18845 0.64 -2.7
4,235,899 - BPHYT_RS18845 0.64 -2.3
4,235,899 - BPHYT_RS18845 0.64 -2.2
4,235,899 - BPHYT_RS18845 0.64 -4.4
4,235,950 - BPHYT_RS18845 0.66 -4.0
4,236,065 - BPHYT_RS18845 0.72 -3.6
4,236,065 - BPHYT_RS18845 0.72 -3.9
4,236,065 - BPHYT_RS18845 0.72 -1.9
4,236,099 + BPHYT_RS18845 0.74 -6.4
4,236,276 + BPHYT_RS18845 0.83 -5.2
4,236,276 + BPHYT_RS18845 0.83 -1.4
4,236,277 - BPHYT_RS18845 0.83 -3.2
4,236,351 + BPHYT_RS18845 0.87 -5.5
4,236,352 - BPHYT_RS18845 0.87 -5.0
4,236,405 + BPHYT_RS18845 0.89 -3.8
4,236,405 + BPHYT_RS18845 0.89 -2.7
4,236,406 - BPHYT_RS18845 0.89 -1.7
4,236,415 - BPHYT_RS18845 0.90 -5.4
4,236,456 + -4.5
4,236,456 + -0.6
4,236,471 + -2.5
4,236,472 - -2.7
4,236,492 + -0.9
4,236,493 - -1.4
4,236,638 + -6.5
4,236,639 - +0.4
4,237,209 + BPHYT_RS18850 0.42 +0.9
4,237,209 + BPHYT_RS18850 0.42 +0.1
4,237,210 - BPHYT_RS18850 0.42 +0.0
4,237,210 - BPHYT_RS18850 0.42 +0.3
4,237,210 - BPHYT_RS18850 0.42 +0.0
4,237,210 - BPHYT_RS18850 0.42 +0.1
4,237,247 - BPHYT_RS18850 0.47 +0.2
4,237,264 + BPHYT_RS18850 0.49 -0.3
4,237,265 - BPHYT_RS18850 0.49 +0.6

Or see this region's nucleotide sequence