Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17830

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS17825 and BPHYT_RS17830 overlap by 4 nucleotidesBPHYT_RS17830 and BPHYT_RS17835 are separated by 187 nucleotides BPHYT_RS17825: BPHYT_RS17825 - transcriptional regulator, at 4,022,036 to 4,022,776 _RS17825 BPHYT_RS17830: BPHYT_RS17830 - histidine kinase, at 4,022,773 to 4,024,044 _RS17830 BPHYT_RS17835: BPHYT_RS17835 - protein tyrosine phosphatase, at 4,024,232 to 4,025,182 _RS17835 Position (kb) 4022 4023 4024 4025Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4021.977 kb on + strandat 4021.978 kb on - strandat 4022.077 kb on - strandat 4022.556 kb on - strand, within BPHYT_RS17825at 4022.688 kb on - strand, within BPHYT_RS17825at 4023.128 kb on + strand, within BPHYT_RS17830at 4023.128 kb on + strand, within BPHYT_RS17830at 4024.118 kb on + strandat 4024.299 kb on + strandat 4024.318 kb on - strandat 4024.353 kb on + strand, within BPHYT_RS17835at 4024.455 kb on + strand, within BPHYT_RS17835at 4024.455 kb on + strand, within BPHYT_RS17835at 4024.807 kb on - strand, within BPHYT_RS17835at 4024.878 kb on + strand, within BPHYT_RS17835

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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4,021,977 + -0.4
4,021,978 - +2.0
4,022,077 - -1.4
4,022,556 - BPHYT_RS17825 0.70 +3.9
4,022,688 - BPHYT_RS17825 0.88 +0.1
4,023,128 + BPHYT_RS17830 0.28 -2.3
4,023,128 + BPHYT_RS17830 0.28 -1.5
4,024,118 + +0.2
4,024,299 + +0.4
4,024,318 - -0.6
4,024,353 + BPHYT_RS17835 0.13 -0.2
4,024,455 + BPHYT_RS17835 0.23 -0.9
4,024,455 + BPHYT_RS17835 0.23 -0.3
4,024,807 - BPHYT_RS17835 0.60 -0.7
4,024,878 + BPHYT_RS17835 0.68 +3.3

Or see this region's nucleotide sequence