Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05560 and BPHYT_RS05565 are separated by 372 nucleotides BPHYT_RS05565 and BPHYT_RS05570 are separated by 46 nucleotides BPHYT_RS05570 and BPHYT_RS05575 are separated by 305 nucleotides
BPHYT_RS05560: BPHYT_RS05560 - Fis family transcriptional regulator, at 1,277,030 to 1,278,088
_RS05560
BPHYT_RS05565: BPHYT_RS05565 - membrane protein, at 1,278,461 to 1,278,778
_RS05565
BPHYT_RS05570: BPHYT_RS05570 - hypothetical protein, at 1,278,825 to 1,279,100
_RS05570
BPHYT_RS05575: BPHYT_RS05575 - Fis family transcriptional regulator, at 1,279,406 to 1,280,806
_RS05575
Position (kb)
1278
1279 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1277.944 kb on - strand, within BPHYT_RS05560 at 1277.973 kb on + strand, within BPHYT_RS05560 at 1277.973 kb on + strand, within BPHYT_RS05560 at 1277.973 kb on + strand, within BPHYT_RS05560 at 1277.974 kb on - strand, within BPHYT_RS05560 at 1278.089 kb on - strand at 1278.163 kb on + strand at 1278.182 kb on + strand at 1278.361 kb on + strand at 1278.361 kb on + strand at 1278.361 kb on + strand at 1278.361 kb on + strand at 1278.361 kb on + strand at 1278.361 kb on + strand at 1278.361 kb on + strand at 1278.361 kb on + strand at 1278.361 kb on + strand at 1278.361 kb on + strand at 1278.362 kb on - strand at 1278.362 kb on - strand at 1278.362 kb on - strand at 1278.362 kb on - strand at 1278.407 kb on - strand at 1278.407 kb on - strand at 1278.699 kb on - strand, within BPHYT_RS05565 at 1278.699 kb on - strand, within BPHYT_RS05565 at 1278.895 kb on + strand, within BPHYT_RS05570 at 1279.094 kb on + strand at 1279.185 kb on + strand at 1279.186 kb on - strand at 1279.191 kb on - strand at 1279.194 kb on + strand at 1279.198 kb on + strand at 1279.239 kb on - strand at 1279.305 kb on + strand at 1279.305 kb on + strand at 1279.305 kb on + strand at 1279.306 kb on - strand at 1279.306 kb on - strand at 1279.416 kb on + strand at 1279.416 kb on + strand at 1279.416 kb on + strand at 1279.417 kb on - strand at 1279.417 kb on - strand at 1279.417 kb on - strand at 1279.417 kb on - strand at 1279.417 kb on - strand at 1279.417 kb on - strand at 1279.417 kb on - strand at 1279.555 kb on + strand, within BPHYT_RS05575 at 1279.697 kb on + strand, within BPHYT_RS05575 at 1279.697 kb on + strand, within BPHYT_RS05575
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 1,277,944 - BPHYT_RS05560 0.86 +0.3 1,277,973 + BPHYT_RS05560 0.89 +0.8 1,277,973 + BPHYT_RS05560 0.89 +0.3 1,277,973 + BPHYT_RS05560 0.89 +0.4 1,277,974 - BPHYT_RS05560 0.89 +0.9 1,278,089 - +0.3 1,278,163 + +0.3 1,278,182 + +0.2 1,278,361 + -0.6 1,278,361 + +0.6 1,278,361 + -1.2 1,278,361 + -0.2 1,278,361 + +0.8 1,278,361 + +0.8 1,278,361 + -0.3 1,278,361 + +2.4 1,278,361 + +0.3 1,278,361 + +0.9 1,278,362 - -0.7 1,278,362 - -0.7 1,278,362 - -0.2 1,278,362 - -0.8 1,278,407 - -1.8 1,278,407 - +0.8 1,278,699 - BPHYT_RS05565 0.75 -1.2 1,278,699 - BPHYT_RS05565 0.75 -2.5 1,278,895 + BPHYT_RS05570 0.25 +0.5 1,279,094 + -0.4 1,279,185 + -0.6 1,279,186 - -1.2 1,279,191 - -0.5 1,279,194 + +1.4 1,279,198 + -0.5 1,279,239 - +0.6 1,279,305 + +0.4 1,279,305 + -1.5 1,279,305 + -0.4 1,279,306 - +0.7 1,279,306 - +0.5 1,279,416 + +0.4 1,279,416 + +0.6 1,279,416 + +0.8 1,279,417 - +0.9 1,279,417 - +0.0 1,279,417 - -0.3 1,279,417 - +0.1 1,279,417 - -0.0 1,279,417 - -0.3 1,279,417 - +0.3 1,279,555 + BPHYT_RS05575 0.11 +1.1 1,279,697 + BPHYT_RS05575 0.21 +0.6 1,279,697 + BPHYT_RS05575 0.21 +0.3
Or see this region's nucleotide sequence