Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05565

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05560 and BPHYT_RS05565 are separated by 372 nucleotidesBPHYT_RS05565 and BPHYT_RS05570 are separated by 46 nucleotidesBPHYT_RS05570 and BPHYT_RS05575 are separated by 305 nucleotides BPHYT_RS05560: BPHYT_RS05560 - Fis family transcriptional regulator, at 1,277,030 to 1,278,088 _RS05560 BPHYT_RS05565: BPHYT_RS05565 - membrane protein, at 1,278,461 to 1,278,778 _RS05565 BPHYT_RS05570: BPHYT_RS05570 - hypothetical protein, at 1,278,825 to 1,279,100 _RS05570 BPHYT_RS05575: BPHYT_RS05575 - Fis family transcriptional regulator, at 1,279,406 to 1,280,806 _RS05575 Position (kb) 1278 1279Strain fitness (log2 ratio) -2 -1 0 1 2at 1277.944 kb on - strand, within BPHYT_RS05560at 1277.973 kb on + strand, within BPHYT_RS05560at 1277.973 kb on + strand, within BPHYT_RS05560at 1277.973 kb on + strand, within BPHYT_RS05560at 1277.974 kb on - strand, within BPHYT_RS05560at 1278.089 kb on - strandat 1278.163 kb on + strandat 1278.182 kb on + strandat 1278.361 kb on + strandat 1278.361 kb on + strandat 1278.361 kb on + strandat 1278.361 kb on + strandat 1278.361 kb on + strandat 1278.361 kb on + strandat 1278.361 kb on + strandat 1278.361 kb on + strandat 1278.361 kb on + strandat 1278.361 kb on + strandat 1278.362 kb on - strandat 1278.362 kb on - strandat 1278.362 kb on - strandat 1278.362 kb on - strandat 1278.407 kb on - strandat 1278.407 kb on - strandat 1278.699 kb on - strand, within BPHYT_RS05565at 1278.699 kb on - strand, within BPHYT_RS05565at 1278.895 kb on + strand, within BPHYT_RS05570at 1279.094 kb on + strandat 1279.185 kb on + strandat 1279.186 kb on - strandat 1279.191 kb on - strandat 1279.194 kb on + strandat 1279.198 kb on + strandat 1279.239 kb on - strandat 1279.305 kb on + strandat 1279.305 kb on + strandat 1279.305 kb on + strandat 1279.306 kb on - strandat 1279.306 kb on - strandat 1279.416 kb on + strandat 1279.416 kb on + strandat 1279.416 kb on + strandat 1279.417 kb on - strandat 1279.417 kb on - strandat 1279.417 kb on - strandat 1279.417 kb on - strandat 1279.417 kb on - strandat 1279.417 kb on - strandat 1279.417 kb on - strandat 1279.555 kb on + strand, within BPHYT_RS05575at 1279.697 kb on + strand, within BPHYT_RS05575at 1279.697 kb on + strand, within BPHYT_RS05575

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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1,277,944 - BPHYT_RS05560 0.86 +0.3
1,277,973 + BPHYT_RS05560 0.89 +0.8
1,277,973 + BPHYT_RS05560 0.89 +0.3
1,277,973 + BPHYT_RS05560 0.89 +0.4
1,277,974 - BPHYT_RS05560 0.89 +0.9
1,278,089 - +0.3
1,278,163 + +0.3
1,278,182 + +0.2
1,278,361 + -0.6
1,278,361 + +0.6
1,278,361 + -1.2
1,278,361 + -0.2
1,278,361 + +0.8
1,278,361 + +0.8
1,278,361 + -0.3
1,278,361 + +2.4
1,278,361 + +0.3
1,278,361 + +0.9
1,278,362 - -0.7
1,278,362 - -0.7
1,278,362 - -0.2
1,278,362 - -0.8
1,278,407 - -1.8
1,278,407 - +0.8
1,278,699 - BPHYT_RS05565 0.75 -1.2
1,278,699 - BPHYT_RS05565 0.75 -2.5
1,278,895 + BPHYT_RS05570 0.25 +0.5
1,279,094 + -0.4
1,279,185 + -0.6
1,279,186 - -1.2
1,279,191 - -0.5
1,279,194 + +1.4
1,279,198 + -0.5
1,279,239 - +0.6
1,279,305 + +0.4
1,279,305 + -1.5
1,279,305 + -0.4
1,279,306 - +0.7
1,279,306 - +0.5
1,279,416 + +0.4
1,279,416 + +0.6
1,279,416 + +0.8
1,279,417 - +0.9
1,279,417 - +0.0
1,279,417 - -0.3
1,279,417 - +0.1
1,279,417 - -0.0
1,279,417 - -0.3
1,279,417 - +0.3
1,279,555 + BPHYT_RS05575 0.11 +1.1
1,279,697 + BPHYT_RS05575 0.21 +0.6
1,279,697 + BPHYT_RS05575 0.21 +0.3

Or see this region's nucleotide sequence