Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01740 and BPHYT_RS01745 overlap by 28 nucleotides BPHYT_RS01745 and BPHYT_RS01750 overlap by 10 nucleotides BPHYT_RS01750 and BPHYT_RS01755 are separated by 101 nucleotides
BPHYT_RS01740: BPHYT_RS01740 - hypothetical protein, at 396,373 to 397,395
_RS01740
BPHYT_RS01745: BPHYT_RS01745 - carbon monoxide dehydrogenase subunit G, at 397,368 to 397,964
_RS01745
BPHYT_RS01750: BPHYT_RS01750 - von Willebrand factor A, at 397,955 to 399,241
_RS01750
BPHYT_RS01755: BPHYT_RS01755 - ATPase, at 399,343 to 400,230
_RS01755
Position (kb) 397
398
399
400 Strain fitness (log2 ratio) -1
0
1
2 at 397.037 kb on - strand, within BPHYT_RS01740 at 397.324 kb on + strand at 397.325 kb on - strand at 397.327 kb on + strand at 397.457 kb on + strand, within BPHYT_RS01745 at 397.457 kb on + strand, within BPHYT_RS01745 at 397.457 kb on + strand, within BPHYT_RS01745 at 397.458 kb on - strand, within BPHYT_RS01745 at 397.458 kb on - strand, within BPHYT_RS01745 at 397.458 kb on - strand, within BPHYT_RS01745 at 397.744 kb on + strand, within BPHYT_RS01745 at 397.835 kb on - strand, within BPHYT_RS01745 at 398.058 kb on - strand at 398.062 kb on + strand at 398.062 kb on + strand at 398.063 kb on - strand at 398.160 kb on - strand, within BPHYT_RS01750 at 398.160 kb on - strand, within BPHYT_RS01750 at 398.160 kb on - strand, within BPHYT_RS01750 at 398.475 kb on + strand, within BPHYT_RS01750 at 398.494 kb on - strand, within BPHYT_RS01750 at 398.563 kb on - strand, within BPHYT_RS01750 at 398.756 kb on + strand, within BPHYT_RS01750 at 398.827 kb on + strand, within BPHYT_RS01750 at 398.828 kb on - strand, within BPHYT_RS01750 at 399.269 kb on - strand at 399.292 kb on + strand at 399.293 kb on - strand at 399.345 kb on - strand at 399.650 kb on + strand, within BPHYT_RS01755 at 399.651 kb on - strand, within BPHYT_RS01755 at 399.680 kb on - strand, within BPHYT_RS01755 at 399.914 kb on + strand, within BPHYT_RS01755 at 399.914 kb on + strand, within BPHYT_RS01755 at 399.914 kb on + strand, within BPHYT_RS01755 at 400.146 kb on - strand at 400.178 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 397,037 - BPHYT_RS01740 0.65 +0.1 397,324 + -0.5 397,325 - -0.9 397,327 + -0.5 397,457 + BPHYT_RS01745 0.15 +0.7 397,457 + BPHYT_RS01745 0.15 -0.7 397,457 + BPHYT_RS01745 0.15 +0.4 397,458 - BPHYT_RS01745 0.15 +0.4 397,458 - BPHYT_RS01745 0.15 -0.8 397,458 - BPHYT_RS01745 0.15 -1.5 397,744 + BPHYT_RS01745 0.63 +0.3 397,835 - BPHYT_RS01745 0.78 -0.1 398,058 - -1.0 398,062 + -0.4 398,062 + +0.2 398,063 - -0.3 398,160 - BPHYT_RS01750 0.16 -0.4 398,160 - BPHYT_RS01750 0.16 -0.7 398,160 - BPHYT_RS01750 0.16 -0.7 398,475 + BPHYT_RS01750 0.40 +0.1 398,494 - BPHYT_RS01750 0.42 -0.2 398,563 - BPHYT_RS01750 0.47 -0.7 398,756 + BPHYT_RS01750 0.62 +0.1 398,827 + BPHYT_RS01750 0.68 +1.3 398,828 - BPHYT_RS01750 0.68 +1.8 399,269 - +1.4 399,292 + +0.5 399,293 - +1.7 399,345 - +0.6 399,650 + BPHYT_RS01755 0.35 -0.3 399,651 - BPHYT_RS01755 0.35 -0.4 399,680 - BPHYT_RS01755 0.38 +0.7 399,914 + BPHYT_RS01755 0.64 +0.4 399,914 + BPHYT_RS01755 0.64 +0.2 399,914 + BPHYT_RS01755 0.64 +0.7 400,146 - +0.2 400,178 + -0.5
Or see this region's nucleotide sequence