Experiment: CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13585 and BBR_RS13590 are separated by 31 nucleotides BBR_RS13590 and BBR_RS13595 are separated by 379 nucleotides
BBR_RS13585: BBR_RS13585 - transporter, at 818,642 to 819,712
_RS13585
BBR_RS13590: BBR_RS13590 - hypothetical protein, at 819,744 to 819,993
_RS13590
BBR_RS13595: BBR_RS13595 - glycosyl transferase, at 820,373 to 822,640
_RS13595
Position (kb) 819
820 Strain fitness (log2 ratio) -2
-1
0
1 at 818.757 kb on + strand, within BBR_RS13585 at 818.762 kb on + strand, within BBR_RS13585 at 818.770 kb on + strand, within BBR_RS13585 at 818.770 kb on - strand, within BBR_RS13585 at 818.823 kb on + strand, within BBR_RS13585 at 818.889 kb on - strand, within BBR_RS13585 at 818.920 kb on + strand, within BBR_RS13585 at 818.920 kb on + strand, within BBR_RS13585 at 818.920 kb on + strand, within BBR_RS13585 at 819.043 kb on - strand, within BBR_RS13585 at 819.064 kb on + strand, within BBR_RS13585 at 819.064 kb on + strand, within BBR_RS13585 at 819.078 kb on + strand, within BBR_RS13585 at 819.078 kb on + strand, within BBR_RS13585 at 819.078 kb on + strand, within BBR_RS13585 at 819.078 kb on + strand, within BBR_RS13585 at 819.078 kb on + strand, within BBR_RS13585 at 819.078 kb on + strand, within BBR_RS13585 at 819.078 kb on + strand, within BBR_RS13585 at 819.078 kb on + strand, within BBR_RS13585 at 819.078 kb on + strand, within BBR_RS13585 at 819.086 kb on - strand, within BBR_RS13585 at 819.086 kb on - strand, within BBR_RS13585 at 819.086 kb on - strand, within BBR_RS13585 at 819.312 kb on + strand, within BBR_RS13585 at 819.320 kb on - strand, within BBR_RS13585 at 819.342 kb on - strand, within BBR_RS13585 at 819.342 kb on - strand, within BBR_RS13585 at 819.415 kb on + strand, within BBR_RS13585 at 819.425 kb on - strand, within BBR_RS13585 at 819.425 kb on - strand, within BBR_RS13585 at 819.447 kb on + strand, within BBR_RS13585 at 819.447 kb on + strand, within BBR_RS13585 at 819.506 kb on + strand, within BBR_RS13585 at 819.506 kb on + strand, within BBR_RS13585 at 819.519 kb on - strand, within BBR_RS13585 at 819.583 kb on + strand, within BBR_RS13585 at 819.622 kb on + strand at 819.701 kb on + strand at 819.719 kb on + strand at 819.764 kb on + strand at 819.772 kb on - strand, within BBR_RS13590 at 819.782 kb on - strand, within BBR_RS13590 at 819.803 kb on + strand, within BBR_RS13590 at 819.810 kb on - strand, within BBR_RS13590 at 819.811 kb on - strand, within BBR_RS13590 at 819.811 kb on - strand, within BBR_RS13590 at 819.836 kb on - strand, within BBR_RS13590 at 819.848 kb on - strand, within BBR_RS13590 at 819.897 kb on + strand, within BBR_RS13590 at 819.908 kb on + strand, within BBR_RS13590 at 819.915 kb on - strand, within BBR_RS13590 at 819.927 kb on - strand, within BBR_RS13590 at 819.988 kb on + strand at 819.990 kb on + strand at 819.996 kb on - strand at 820.003 kb on + strand at 820.054 kb on - strand at 820.054 kb on - strand at 820.134 kb on + strand at 820.177 kb on + strand at 820.258 kb on + strand at 820.301 kb on + strand at 820.301 kb on + strand at 820.309 kb on - strand at 820.310 kb on + strand at 820.366 kb on - strand at 820.442 kb on + strand at 820.580 kb on + strand at 820.665 kb on + strand, within BBR_RS13595 at 820.665 kb on + strand, within BBR_RS13595 at 820.665 kb on + strand, within BBR_RS13595 at 820.747 kb on + strand, within BBR_RS13595 at 820.819 kb on + strand, within BBR_RS13595 at 820.837 kb on - strand, within BBR_RS13595 at 820.851 kb on + strand, within BBR_RS13595 at 820.894 kb on + strand, within BBR_RS13595 at 820.950 kb on + strand, within BBR_RS13595 at 820.987 kb on - strand, within BBR_RS13595
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos remove 818,757 + BBR_RS13585 0.11 -2.5 818,762 + BBR_RS13585 0.11 -0.5 818,770 + BBR_RS13585 0.12 +0.7 818,770 - BBR_RS13585 0.12 +0.1 818,823 + BBR_RS13585 0.17 +1.5 818,889 - BBR_RS13585 0.23 +1.3 818,920 + BBR_RS13585 0.26 -0.2 818,920 + BBR_RS13585 0.26 -1.3 818,920 + BBR_RS13585 0.26 -2.4 819,043 - BBR_RS13585 0.37 +0.3 819,064 + BBR_RS13585 0.39 -0.7 819,064 + BBR_RS13585 0.39 +0.6 819,078 + BBR_RS13585 0.41 +0.8 819,078 + BBR_RS13585 0.41 -0.3 819,078 + BBR_RS13585 0.41 +0.2 819,078 + BBR_RS13585 0.41 +0.6 819,078 + BBR_RS13585 0.41 +0.0 819,078 + BBR_RS13585 0.41 -0.2 819,078 + BBR_RS13585 0.41 +0.1 819,078 + BBR_RS13585 0.41 +0.3 819,078 + BBR_RS13585 0.41 -1.3 819,086 - BBR_RS13585 0.41 +0.8 819,086 - BBR_RS13585 0.41 -0.8 819,086 - BBR_RS13585 0.41 -0.1 819,312 + BBR_RS13585 0.63 -0.4 819,320 - BBR_RS13585 0.63 -0.3 819,342 - BBR_RS13585 0.65 -0.4 819,342 - BBR_RS13585 0.65 -0.0 819,415 + BBR_RS13585 0.72 -0.2 819,425 - BBR_RS13585 0.73 -1.7 819,425 - BBR_RS13585 0.73 -0.3 819,447 + BBR_RS13585 0.75 -1.0 819,447 + BBR_RS13585 0.75 -0.8 819,506 + BBR_RS13585 0.81 +1.0 819,506 + BBR_RS13585 0.81 -1.0 819,519 - BBR_RS13585 0.82 -2.5 819,583 + BBR_RS13585 0.88 +0.3 819,622 + -2.4 819,701 + +1.0 819,719 + -0.3 819,764 + +1.0 819,772 - BBR_RS13590 0.11 +0.2 819,782 - BBR_RS13590 0.15 -0.3 819,803 + BBR_RS13590 0.24 +0.6 819,810 - BBR_RS13590 0.26 -1.4 819,811 - BBR_RS13590 0.27 -0.7 819,811 - BBR_RS13590 0.27 -1.3 819,836 - BBR_RS13590 0.37 -1.9 819,848 - BBR_RS13590 0.42 -2.1 819,897 + BBR_RS13590 0.61 +0.5 819,908 + BBR_RS13590 0.66 -0.4 819,915 - BBR_RS13590 0.68 -1.1 819,927 - BBR_RS13590 0.73 +0.3 819,988 + -0.2 819,990 + +0.3 819,996 - -0.3 820,003 + -0.1 820,054 - -0.3 820,054 - -0.7 820,134 + +0.0 820,177 + -0.2 820,258 + -0.4 820,301 + +0.0 820,301 + -0.6 820,309 - -0.0 820,310 + +0.5 820,366 - +0.1 820,442 + -0.1 820,580 + +0.6 820,665 + BBR_RS13595 0.13 -2.2 820,665 + BBR_RS13595 0.13 -1.5 820,665 + BBR_RS13595 0.13 -0.3 820,747 + BBR_RS13595 0.16 -0.9 820,819 + BBR_RS13595 0.20 -0.8 820,837 - BBR_RS13595 0.20 +0.4 820,851 + BBR_RS13595 0.21 -0.2 820,894 + BBR_RS13595 0.23 +1.1 820,950 + BBR_RS13595 0.25 -1.3 820,987 - BBR_RS13595 0.27 -1.4
Or see this region's nucleotide sequence