Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_30165

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_30160 and AO356_30165 are separated by 975 nucleotidesAO356_30165 and AO356_30170 are separated by 459 nucleotides AO356_30160: AO356_30160 - hypothetical protein, at 7,039,285 to 7,039,632 _30160 AO356_30165: AO356_30165 - hypothetical protein, at 7,040,608 to 7,041,681 _30165 AO356_30170: AO356_30170 - cytochrome B, at 7,042,141 to 7,042,719 _30170 Position (kb) 7040 7041 7042Strain fitness (log2 ratio) -2 -1 0 1 2at 7039.613 kb on + strandat 7039.647 kb on + strandat 7039.648 kb on - strandat 7039.689 kb on + strandat 7039.689 kb on + strandat 7039.766 kb on - strandat 7039.809 kb on + strandat 7039.809 kb on + strandat 7039.855 kb on + strandat 7039.855 kb on + strandat 7039.856 kb on - strandat 7039.860 kb on - strandat 7039.960 kb on - strandat 7040.037 kb on + strandat 7040.118 kb on - strandat 7040.190 kb on + strandat 7040.229 kb on + strandat 7040.284 kb on + strandat 7040.333 kb on + strandat 7040.334 kb on - strandat 7040.464 kb on + strandat 7040.464 kb on + strandat 7040.465 kb on - strandat 7040.465 kb on - strandat 7040.465 kb on - strandat 7040.465 kb on - strandat 7040.467 kb on + strandat 7040.467 kb on + strandat 7040.660 kb on + strandat 7040.660 kb on + strandat 7040.661 kb on - strandat 7040.742 kb on + strand, within AO356_30165at 7040.876 kb on + strand, within AO356_30165at 7040.876 kb on + strand, within AO356_30165at 7040.876 kb on + strand, within AO356_30165at 7040.939 kb on + strand, within AO356_30165at 7040.940 kb on - strand, within AO356_30165at 7040.951 kb on + strand, within AO356_30165at 7040.956 kb on + strand, within AO356_30165at 7040.972 kb on + strand, within AO356_30165at 7040.972 kb on + strand, within AO356_30165at 7041.072 kb on + strand, within AO356_30165at 7041.086 kb on + strand, within AO356_30165at 7041.086 kb on + strand, within AO356_30165at 7041.087 kb on - strand, within AO356_30165at 7041.087 kb on - strand, within AO356_30165at 7041.087 kb on - strand, within AO356_30165at 7041.087 kb on - strand, within AO356_30165at 7041.087 kb on - strand, within AO356_30165at 7041.218 kb on + strand, within AO356_30165at 7041.381 kb on + strand, within AO356_30165at 7041.381 kb on + strand, within AO356_30165at 7041.422 kb on + strand, within AO356_30165at 7041.423 kb on - strand, within AO356_30165at 7041.579 kb on - strandat 7041.619 kb on + strandat 7041.620 kb on - strandat 7041.620 kb on - strandat 7041.738 kb on + strandat 7041.739 kb on - strandat 7041.779 kb on + strandat 7041.782 kb on - strandat 7041.787 kb on - strandat 7041.821 kb on - strandat 7041.821 kb on - strandat 7041.821 kb on - strandat 7041.821 kb on - strandat 7041.978 kb on + strandat 7041.978 kb on + strandat 7041.979 kb on - strandat 7042.081 kb on - strandat 7042.081 kb on - strandat 7042.081 kb on - strandat 7042.299 kb on + strand, within AO356_30170at 7042.300 kb on - strand, within AO356_30170at 7042.300 kb on - strand, within AO356_30170at 7042.300 kb on - strand, within AO356_30170at 7042.300 kb on - strand, within AO356_30170at 7042.300 kb on - strand, within AO356_30170at 7042.439 kb on + strand, within AO356_30170at 7042.439 kb on + strand, within AO356_30170at 7042.440 kb on - strand, within AO356_30170at 7042.440 kb on - strand, within AO356_30170at 7042.598 kb on + strand, within AO356_30170at 7042.598 kb on + strand, within AO356_30170at 7042.599 kb on - strand, within AO356_30170

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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7,039,613 + -0.3
7,039,647 + -0.0
7,039,648 - -0.9
7,039,689 + -0.8
7,039,689 + -0.4
7,039,766 - +0.1
7,039,809 + +0.1
7,039,809 + +0.3
7,039,855 + +0.3
7,039,855 + +0.5
7,039,856 - -0.2
7,039,860 - +0.3
7,039,960 - -0.3
7,040,037 + +0.9
7,040,118 - -0.7
7,040,190 + -0.2
7,040,229 + -0.1
7,040,284 + -0.3
7,040,333 + -0.0
7,040,334 - +0.5
7,040,464 + +0.0
7,040,464 + +0.3
7,040,465 - -1.2
7,040,465 - -0.3
7,040,465 - +0.1
7,040,465 - +0.3
7,040,467 + -0.3
7,040,467 + -0.9
7,040,660 + -1.9
7,040,660 + -0.2
7,040,661 - +1.8
7,040,742 + AO356_30165 0.12 -0.5
7,040,876 + AO356_30165 0.25 -0.8
7,040,876 + AO356_30165 0.25 -0.2
7,040,876 + AO356_30165 0.25 +0.2
7,040,939 + AO356_30165 0.31 -1.2
7,040,940 - AO356_30165 0.31 +0.6
7,040,951 + AO356_30165 0.32 +0.7
7,040,956 + AO356_30165 0.32 +0.3
7,040,972 + AO356_30165 0.34 +0.5
7,040,972 + AO356_30165 0.34 -0.6
7,041,072 + AO356_30165 0.43 -2.0
7,041,086 + AO356_30165 0.45 +1.1
7,041,086 + AO356_30165 0.45 -0.1
7,041,087 - AO356_30165 0.45 +0.3
7,041,087 - AO356_30165 0.45 +0.9
7,041,087 - AO356_30165 0.45 -0.4
7,041,087 - AO356_30165 0.45 +0.1
7,041,087 - AO356_30165 0.45 +0.1
7,041,218 + AO356_30165 0.57 +0.1
7,041,381 + AO356_30165 0.72 +1.4
7,041,381 + AO356_30165 0.72 +0.5
7,041,422 + AO356_30165 0.76 -0.6
7,041,423 - AO356_30165 0.76 -0.7
7,041,579 - +0.7
7,041,619 + -0.2
7,041,620 - +0.5
7,041,620 - +0.1
7,041,738 + +0.6
7,041,739 - +0.6
7,041,779 + -0.3
7,041,782 - +0.4
7,041,787 - -0.2
7,041,821 - -0.1
7,041,821 - +0.8
7,041,821 - +0.3
7,041,821 - +0.5
7,041,978 + +0.2
7,041,978 + -1.2
7,041,979 - -0.3
7,042,081 - -0.1
7,042,081 - -0.0
7,042,081 - +0.5
7,042,299 + AO356_30170 0.27 +0.8
7,042,300 - AO356_30170 0.27 +0.7
7,042,300 - AO356_30170 0.27 +0.2
7,042,300 - AO356_30170 0.27 -1.4
7,042,300 - AO356_30170 0.27 +0.4
7,042,300 - AO356_30170 0.27 -0.4
7,042,439 + AO356_30170 0.51 +1.7
7,042,439 + AO356_30170 0.51 +0.4
7,042,440 - AO356_30170 0.52 -0.1
7,042,440 - AO356_30170 0.52 +0.0
7,042,598 + AO356_30170 0.79 -1.6
7,042,598 + AO356_30170 0.79 -0.0
7,042,599 - AO356_30170 0.79 -0.8

Or see this region's nucleotide sequence