Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29590

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29585 and AO356_29590 are separated by 244 nucleotidesAO356_29590 and AO356_29595 are separated by 146 nucleotides AO356_29585: AO356_29585 - alpha/beta hydrolase, at 6,882,467 to 6,883,237 _29585 AO356_29590: AO356_29590 - ester cyclase, at 6,883,482 to 6,883,874 _29590 AO356_29595: AO356_29595 - trehalose synthase, at 6,884,021 to 6,886,087 _29595 Position (kb) 6883 6884Strain fitness (log2 ratio) -2 -1 0 1at 6882.738 kb on - strand, within AO356_29585at 6882.797 kb on + strand, within AO356_29585at 6882.797 kb on + strand, within AO356_29585at 6882.797 kb on + strand, within AO356_29585at 6882.797 kb on + strand, within AO356_29585at 6882.797 kb on + strand, within AO356_29585at 6882.797 kb on + strand, within AO356_29585at 6882.923 kb on + strand, within AO356_29585at 6882.923 kb on + strand, within AO356_29585at 6882.923 kb on + strand, within AO356_29585at 6882.924 kb on - strand, within AO356_29585at 6882.924 kb on - strand, within AO356_29585at 6882.937 kb on + strand, within AO356_29585at 6883.077 kb on + strand, within AO356_29585at 6883.077 kb on + strand, within AO356_29585at 6883.077 kb on + strand, within AO356_29585at 6883.094 kb on - strand, within AO356_29585at 6883.236 kb on - strandat 6883.429 kb on + strandat 6883.436 kb on + strandat 6883.506 kb on + strandat 6883.506 kb on + strandat 6883.507 kb on - strandat 6883.508 kb on + strandat 6883.515 kb on + strandat 6883.516 kb on - strandat 6883.791 kb on + strand, within AO356_29590at 6883.791 kb on + strand, within AO356_29590at 6883.838 kb on + strandat 6883.843 kb on + strandat 6883.938 kb on + strandat 6883.939 kb on - strandat 6883.971 kb on + strandat 6883.972 kb on - strandat 6883.972 kb on - strandat 6884.039 kb on - strandat 6884.039 kb on - strandat 6884.039 kb on - strandat 6884.104 kb on + strandat 6884.313 kb on + strand, within AO356_29595at 6884.314 kb on - strand, within AO356_29595at 6884.463 kb on + strand, within AO356_29595at 6884.592 kb on + strand, within AO356_29595at 6884.593 kb on - strand, within AO356_29595at 6884.593 kb on - strand, within AO356_29595at 6884.593 kb on - strand, within AO356_29595at 6884.633 kb on - strand, within AO356_29595at 6884.644 kb on + strand, within AO356_29595at 6884.733 kb on + strand, within AO356_29595at 6884.734 kb on - strand, within AO356_29595at 6884.763 kb on + strand, within AO356_29595at 6884.763 kb on + strand, within AO356_29595at 6884.763 kb on + strand, within AO356_29595at 6884.764 kb on - strand, within AO356_29595at 6884.764 kb on - strand, within AO356_29595at 6884.764 kb on - strand, within AO356_29595at 6884.821 kb on - strand, within AO356_29595at 6884.821 kb on - strand, within AO356_29595at 6884.826 kb on + strand, within AO356_29595at 6884.827 kb on - strand, within AO356_29595at 6884.827 kb on - strand, within AO356_29595at 6884.827 kb on - strand, within AO356_29595at 6884.827 kb on - strand, within AO356_29595at 6884.827 kb on - strand, within AO356_29595at 6884.830 kb on + strand, within AO356_29595at 6884.830 kb on + strand, within AO356_29595at 6884.830 kb on + strand, within AO356_29595at 6884.830 kb on + strand, within AO356_29595at 6884.831 kb on - strand, within AO356_29595at 6884.831 kb on - strand, within AO356_29595

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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6,882,738 - AO356_29585 0.35 -0.0
6,882,797 + AO356_29585 0.43 -0.5
6,882,797 + AO356_29585 0.43 +1.4
6,882,797 + AO356_29585 0.43 +0.5
6,882,797 + AO356_29585 0.43 +0.3
6,882,797 + AO356_29585 0.43 -0.6
6,882,797 + AO356_29585 0.43 +1.0
6,882,923 + AO356_29585 0.59 -0.9
6,882,923 + AO356_29585 0.59 +0.7
6,882,923 + AO356_29585 0.59 -0.8
6,882,924 - AO356_29585 0.59 -0.9
6,882,924 - AO356_29585 0.59 -0.5
6,882,937 + AO356_29585 0.61 -0.2
6,883,077 + AO356_29585 0.79 -0.9
6,883,077 + AO356_29585 0.79 -0.4
6,883,077 + AO356_29585 0.79 +0.2
6,883,094 - AO356_29585 0.81 +0.6
6,883,236 - +0.1
6,883,429 + -0.2
6,883,436 + +0.1
6,883,506 + -0.5
6,883,506 + -0.4
6,883,507 - +0.6
6,883,508 + +0.7
6,883,515 + -0.5
6,883,516 - +0.3
6,883,791 + AO356_29590 0.79 -1.0
6,883,791 + AO356_29590 0.79 -0.3
6,883,838 + -0.4
6,883,843 + -0.9
6,883,938 + +1.1
6,883,939 - -0.1
6,883,971 + -2.5
6,883,972 - -0.7
6,883,972 - -0.0
6,884,039 - -0.6
6,884,039 - -0.2
6,884,039 - -0.1
6,884,104 + +0.4
6,884,313 + AO356_29595 0.14 -1.2
6,884,314 - AO356_29595 0.14 -2.3
6,884,463 + AO356_29595 0.21 +0.4
6,884,592 + AO356_29595 0.28 +1.0
6,884,593 - AO356_29595 0.28 +0.6
6,884,593 - AO356_29595 0.28 -1.0
6,884,593 - AO356_29595 0.28 +0.3
6,884,633 - AO356_29595 0.30 -0.1
6,884,644 + AO356_29595 0.30 +0.4
6,884,733 + AO356_29595 0.34 -0.2
6,884,734 - AO356_29595 0.34 -0.4
6,884,763 + AO356_29595 0.36 -0.5
6,884,763 + AO356_29595 0.36 -0.1
6,884,763 + AO356_29595 0.36 -0.0
6,884,764 - AO356_29595 0.36 +0.1
6,884,764 - AO356_29595 0.36 -0.4
6,884,764 - AO356_29595 0.36 -0.8
6,884,821 - AO356_29595 0.39 -0.2
6,884,821 - AO356_29595 0.39 +0.6
6,884,826 + AO356_29595 0.39 -1.0
6,884,827 - AO356_29595 0.39 +0.4
6,884,827 - AO356_29595 0.39 -0.9
6,884,827 - AO356_29595 0.39 -1.8
6,884,827 - AO356_29595 0.39 -0.5
6,884,827 - AO356_29595 0.39 -0.3
6,884,830 + AO356_29595 0.39 -0.8
6,884,830 + AO356_29595 0.39 +0.8
6,884,830 + AO356_29595 0.39 -0.7
6,884,830 + AO356_29595 0.39 +0.4
6,884,831 - AO356_29595 0.39 +0.3
6,884,831 - AO356_29595 0.39 +0.6

Or see this region's nucleotide sequence