Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27975

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27970 and AO356_27975 are separated by 671 nucleotidesAO356_27975 and AO356_27980 are separated by 5 nucleotides AO356_27970: AO356_27970 - Fis family transcriptional regulator, at 6,385,150 to 6,386,925 _27970 AO356_27975: AO356_27975 - hypothetical protein, at 6,387,597 to 6,387,923 _27975 AO356_27980: AO356_27980 - AraC family transcriptional regulator, at 6,387,929 to 6,388,849 _27980 Position (kb) 6387 6388Strain fitness (log2 ratio) -2 -1 0 1at 6387.011 kb on + strandat 6387.021 kb on - strandat 6388.036 kb on + strand, within AO356_27980at 6388.036 kb on + strand, within AO356_27980at 6388.037 kb on - strand, within AO356_27980at 6388.038 kb on + strand, within AO356_27980at 6388.039 kb on - strand, within AO356_27980at 6388.245 kb on + strand, within AO356_27980at 6388.246 kb on - strand, within AO356_27980at 6388.439 kb on - strand, within AO356_27980at 6388.659 kb on + strand, within AO356_27980at 6388.660 kb on - strand, within AO356_27980at 6388.660 kb on - strand, within AO356_27980at 6388.761 kb on + strandat 6388.864 kb on - strandat 6388.869 kb on + strandat 6388.884 kb on - strandat 6388.884 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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6,387,011 + +0.2
6,387,021 - -1.4
6,388,036 + AO356_27980 0.12 +0.6
6,388,036 + AO356_27980 0.12 -2.7
6,388,037 - AO356_27980 0.12 +0.2
6,388,038 + AO356_27980 0.12 +1.4
6,388,039 - AO356_27980 0.12 +0.1
6,388,245 + AO356_27980 0.34 +1.1
6,388,246 - AO356_27980 0.34 +1.5
6,388,439 - AO356_27980 0.55 +0.5
6,388,659 + AO356_27980 0.79 +0.6
6,388,660 - AO356_27980 0.79 +0.0
6,388,660 - AO356_27980 0.79 +1.5
6,388,761 + -0.5
6,388,864 - +0.2
6,388,869 + -0.0
6,388,884 - -0.4
6,388,884 - -0.2

Or see this region's nucleotide sequence