Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24175 and AO356_24180 are separated by 89 nucleotides AO356_24180 and AO356_24185 are separated by 335 nucleotides AO356_24185 and AO356_24190 are separated by 273 nucleotides
AO356_24175: AO356_24175 - formate dehydrogenase, at 5,422,645 to 5,422,866
_24175
AO356_24180: AO356_24180 - nematocidal protein, at 5,422,956 to 5,423,486
_24180
AO356_24185: AO356_24185 - isochorismate-pyruvate lyase, at 5,423,822 to 5,424,142
_24185
AO356_24190: AO356_24190 - GntR family transcriptional regulator, at 5,424,416 to 5,425,129
_24190
Position (kb) 5423
5424
5425 Strain fitness (log2 ratio) -1
0
1 at 5422.864 kb on + strand at 5422.947 kb on - strand at 5422.947 kb on - strand at 5422.957 kb on + strand at 5422.957 kb on + strand at 5422.957 kb on + strand at 5422.978 kb on + strand at 5422.978 kb on + strand at 5422.979 kb on - strand at 5422.979 kb on - strand at 5423.048 kb on - strand, within AO356_24180 at 5423.090 kb on + strand, within AO356_24180 at 5423.090 kb on + strand, within AO356_24180 at 5423.091 kb on - strand, within AO356_24180 at 5423.091 kb on - strand, within AO356_24180 at 5423.092 kb on + strand, within AO356_24180 at 5423.092 kb on + strand, within AO356_24180 at 5423.092 kb on + strand, within AO356_24180 at 5423.092 kb on + strand, within AO356_24180 at 5423.092 kb on + strand, within AO356_24180 at 5423.092 kb on + strand, within AO356_24180 at 5423.093 kb on - strand, within AO356_24180 at 5423.093 kb on - strand, within AO356_24180 at 5423.140 kb on + strand, within AO356_24180 at 5423.197 kb on + strand, within AO356_24180 at 5423.197 kb on + strand, within AO356_24180 at 5423.198 kb on - strand, within AO356_24180 at 5423.198 kb on - strand, within AO356_24180 at 5423.307 kb on + strand, within AO356_24180 at 5423.307 kb on + strand, within AO356_24180 at 5423.579 kb on + strand at 5423.580 kb on - strand at 5423.594 kb on + strand at 5423.594 kb on + strand at 5423.595 kb on - strand at 5423.892 kb on + strand, within AO356_24185 at 5424.023 kb on + strand, within AO356_24185 at 5424.023 kb on + strand, within AO356_24185 at 5424.024 kb on - strand, within AO356_24185 at 5424.024 kb on - strand, within AO356_24185 at 5424.027 kb on + strand, within AO356_24185 at 5424.027 kb on + strand, within AO356_24185 at 5424.027 kb on + strand, within AO356_24185 at 5424.028 kb on - strand, within AO356_24185 at 5424.028 kb on - strand, within AO356_24185 at 5424.144 kb on + strand at 5424.145 kb on - strand at 5424.145 kb on - strand at 5424.145 kb on - strand at 5424.145 kb on - strand at 5424.199 kb on + strand at 5424.199 kb on + strand at 5424.200 kb on - strand at 5424.319 kb on - strand at 5424.319 kb on - strand at 5424.418 kb on - strand at 5424.506 kb on + strand, within AO356_24190 at 5424.506 kb on + strand, within AO356_24190 at 5424.507 kb on - strand, within AO356_24190 at 5424.507 kb on - strand, within AO356_24190 at 5424.694 kb on + strand, within AO356_24190 at 5424.694 kb on + strand, within AO356_24190 at 5424.909 kb on + strand, within AO356_24190 at 5424.910 kb on - strand, within AO356_24190 at 5424.910 kb on - strand, within AO356_24190 at 5424.910 kb on - strand, within AO356_24190 at 5424.910 kb on - strand, within AO356_24190 at 5424.947 kb on + strand, within AO356_24190 at 5424.948 kb on - strand, within AO356_24190 at 5425.062 kb on + strand at 5425.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 5,422,864 + -0.4 5,422,947 - +1.2 5,422,947 - +0.8 5,422,957 + +1.1 5,422,957 + -0.9 5,422,957 + +1.0 5,422,978 + -0.4 5,422,978 + +0.7 5,422,979 - +0.0 5,422,979 - -0.4 5,423,048 - AO356_24180 0.17 +0.9 5,423,090 + AO356_24180 0.25 +0.5 5,423,090 + AO356_24180 0.25 +0.7 5,423,091 - AO356_24180 0.25 +0.2 5,423,091 - AO356_24180 0.25 +0.8 5,423,092 + AO356_24180 0.26 +0.6 5,423,092 + AO356_24180 0.26 -1.2 5,423,092 + AO356_24180 0.26 -0.4 5,423,092 + AO356_24180 0.26 +0.2 5,423,092 + AO356_24180 0.26 -0.5 5,423,092 + AO356_24180 0.26 -0.2 5,423,093 - AO356_24180 0.26 -0.8 5,423,093 - AO356_24180 0.26 -0.6 5,423,140 + AO356_24180 0.35 -0.9 5,423,197 + AO356_24180 0.45 -0.3 5,423,197 + AO356_24180 0.45 -0.6 5,423,198 - AO356_24180 0.46 +0.3 5,423,198 - AO356_24180 0.46 +0.4 5,423,307 + AO356_24180 0.66 +1.0 5,423,307 + AO356_24180 0.66 -0.4 5,423,579 + +0.6 5,423,580 - -0.3 5,423,594 + +0.6 5,423,594 + +0.1 5,423,595 - +0.3 5,423,892 + AO356_24185 0.22 -0.2 5,424,023 + AO356_24185 0.63 +0.5 5,424,023 + AO356_24185 0.63 -0.4 5,424,024 - AO356_24185 0.63 +1.7 5,424,024 - AO356_24185 0.63 -0.9 5,424,027 + AO356_24185 0.64 -0.0 5,424,027 + AO356_24185 0.64 +1.1 5,424,027 + AO356_24185 0.64 +0.1 5,424,028 - AO356_24185 0.64 -1.0 5,424,028 - AO356_24185 0.64 +0.8 5,424,144 + -0.4 5,424,145 - -0.9 5,424,145 - +0.2 5,424,145 - +1.2 5,424,145 - -0.9 5,424,199 + -0.5 5,424,199 + -0.2 5,424,200 - +1.0 5,424,319 - -0.2 5,424,319 - -1.0 5,424,418 - +0.1 5,424,506 + AO356_24190 0.13 +0.8 5,424,506 + AO356_24190 0.13 -1.0 5,424,507 - AO356_24190 0.13 -0.4 5,424,507 - AO356_24190 0.13 +0.9 5,424,694 + AO356_24190 0.39 -0.2 5,424,694 + AO356_24190 0.39 -0.9 5,424,909 + AO356_24190 0.69 -0.3 5,424,910 - AO356_24190 0.69 +0.6 5,424,910 - AO356_24190 0.69 +0.7 5,424,910 - AO356_24190 0.69 +0.9 5,424,910 - AO356_24190 0.69 +1.2 5,424,947 + AO356_24190 0.74 +0.3 5,424,948 - AO356_24190 0.75 -0.4 5,425,062 + -0.6 5,425,063 - -0.7
Or see this region's nucleotide sequence