Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23925 and AO356_23930 are separated by 331 nucleotides AO356_23930 and AO356_23935 are separated by 88 nucleotides AO356_23935 and AO356_23940 are separated by 130 nucleotides
AO356_23925: AO356_23925 - mRNA 3'-end processing factor, at 5,364,525 to 5,365,880
_23925
AO356_23930: AO356_23930 - molecular chaperone Hsp20, at 5,366,212 to 5,366,751
_23930
AO356_23935: AO356_23935 - arginine-ornithine antiporter, at 5,366,840 to 5,368,333
_23935
AO356_23940: AO356_23940 - Crp/Fnr family transcriptional regulator, at 5,368,464 to 5,369,216
_23940
Position (kb) 5366
5367
5368
5369 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5365.988 kb on - strand at 5366.904 kb on - strand at 5366.967 kb on + strand at 5366.989 kb on - strand at 5367.012 kb on + strand, within AO356_23935 at 5367.049 kb on - strand, within AO356_23935 at 5367.109 kb on - strand, within AO356_23935 at 5367.141 kb on + strand, within AO356_23935 at 5367.142 kb on - strand, within AO356_23935 at 5367.142 kb on - strand, within AO356_23935 at 5367.159 kb on + strand, within AO356_23935 at 5367.205 kb on - strand, within AO356_23935 at 5367.410 kb on - strand, within AO356_23935 at 5367.452 kb on + strand, within AO356_23935 at 5367.519 kb on - strand, within AO356_23935 at 5367.519 kb on - strand, within AO356_23935 at 5367.611 kb on + strand, within AO356_23935 at 5367.919 kb on - strand, within AO356_23935 at 5367.981 kb on + strand, within AO356_23935 at 5368.313 kb on - strand at 5368.338 kb on + strand at 5368.338 kb on + strand at 5368.338 kb on + strand at 5368.339 kb on - strand at 5368.339 kb on - strand at 5368.339 kb on - strand at 5368.403 kb on - strand at 5368.437 kb on + strand at 5368.438 kb on - strand at 5368.526 kb on + strand at 5368.527 kb on - strand at 5368.527 kb on - strand at 5368.666 kb on + strand, within AO356_23940 at 5368.679 kb on + strand, within AO356_23940 at 5368.679 kb on + strand, within AO356_23940 at 5368.679 kb on + strand, within AO356_23940 at 5368.679 kb on + strand, within AO356_23940 at 5368.680 kb on - strand, within AO356_23940 at 5368.680 kb on - strand, within AO356_23940 at 5368.702 kb on - strand, within AO356_23940 at 5368.889 kb on + strand, within AO356_23940 at 5368.890 kb on - strand, within AO356_23940 at 5368.897 kb on + strand, within AO356_23940 at 5368.898 kb on - strand, within AO356_23940 at 5369.018 kb on - strand, within AO356_23940 at 5369.048 kb on - strand, within AO356_23940 at 5369.230 kb on - strand at 5369.231 kb on + strand at 5369.231 kb on + strand at 5369.232 kb on - strand at 5369.232 kb on - strand at 5369.246 kb on + strand at 5369.246 kb on + strand at 5369.246 kb on + strand at 5369.246 kb on + strand at 5369.246 kb on + strand at 5369.247 kb on - strand at 5369.247 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 5,365,988 - -0.4 5,366,904 - +0.3 5,366,967 + +2.2 5,366,989 - -0.4 5,367,012 + AO356_23935 0.12 +0.1 5,367,049 - AO356_23935 0.14 -0.7 5,367,109 - AO356_23935 0.18 -0.3 5,367,141 + AO356_23935 0.20 -0.9 5,367,142 - AO356_23935 0.20 +0.3 5,367,142 - AO356_23935 0.20 -0.1 5,367,159 + AO356_23935 0.21 +0.3 5,367,205 - AO356_23935 0.24 +0.6 5,367,410 - AO356_23935 0.38 -0.9 5,367,452 + AO356_23935 0.41 -1.4 5,367,519 - AO356_23935 0.45 -0.9 5,367,519 - AO356_23935 0.45 +0.3 5,367,611 + AO356_23935 0.52 -1.8 5,367,919 - AO356_23935 0.72 +0.0 5,367,981 + AO356_23935 0.76 -0.4 5,368,313 - +0.4 5,368,338 + -0.6 5,368,338 + +0.4 5,368,338 + -0.2 5,368,339 - +0.1 5,368,339 - -0.1 5,368,339 - +0.9 5,368,403 - +0.3 5,368,437 + -0.1 5,368,438 - -1.1 5,368,526 + +1.3 5,368,527 - +1.3 5,368,527 - +0.2 5,368,666 + AO356_23940 0.27 -1.2 5,368,679 + AO356_23940 0.29 -0.2 5,368,679 + AO356_23940 0.29 -0.1 5,368,679 + AO356_23940 0.29 -0.2 5,368,679 + AO356_23940 0.29 +0.2 5,368,680 - AO356_23940 0.29 +0.3 5,368,680 - AO356_23940 0.29 +0.2 5,368,702 - AO356_23940 0.32 -1.2 5,368,889 + AO356_23940 0.56 +1.1 5,368,890 - AO356_23940 0.57 -0.6 5,368,897 + AO356_23940 0.58 -0.2 5,368,898 - AO356_23940 0.58 -2.2 5,369,018 - AO356_23940 0.74 -1.4 5,369,048 - AO356_23940 0.78 -1.3 5,369,230 - -0.2 5,369,231 + +0.2 5,369,231 + +0.6 5,369,232 - +2.0 5,369,232 - +0.4 5,369,246 + -0.4 5,369,246 + -0.9 5,369,246 + +0.9 5,369,246 + -1.1 5,369,246 + +0.8 5,369,247 - -0.3 5,369,247 - +0.4
Or see this region's nucleotide sequence