Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21730

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21725 and AO356_21730 are separated by 204 nucleotidesAO356_21730 and AO356_21735 are separated by 130 nucleotides AO356_21725: AO356_21725 - MFS transporter, at 4,862,138 to 4,863,760 _21725 AO356_21730: AO356_21730 - choline dehydrogenase, at 4,863,965 to 4,865,608 _21730 AO356_21735: AO356_21735 - LysR family transcriptional regulator, at 4,865,739 to 4,866,623 _21735 Position (kb) 4863 4864 4865 4866Strain fitness (log2 ratio) -2 -1 0 1 2at 4863.318 kb on + strand, within AO356_21725at 4863.318 kb on + strand, within AO356_21725at 4863.318 kb on + strand, within AO356_21725at 4863.318 kb on + strand, within AO356_21725at 4863.318 kb on + strand, within AO356_21725at 4863.319 kb on - strand, within AO356_21725at 4863.319 kb on - strand, within AO356_21725at 4863.319 kb on - strand, within AO356_21725at 4863.319 kb on - strand, within AO356_21725at 4863.319 kb on - strand, within AO356_21725at 4863.319 kb on - strand, within AO356_21725at 4863.374 kb on + strand, within AO356_21725at 4863.375 kb on - strand, within AO356_21725at 4863.414 kb on + strand, within AO356_21725at 4863.414 kb on + strand, within AO356_21725at 4863.414 kb on + strand, within AO356_21725at 4863.414 kb on + strand, within AO356_21725at 4863.415 kb on - strand, within AO356_21725at 4863.480 kb on + strand, within AO356_21725at 4863.480 kb on + strand, within AO356_21725at 4863.480 kb on + strand, within AO356_21725at 4863.481 kb on - strand, within AO356_21725at 4863.481 kb on - strand, within AO356_21725at 4863.481 kb on - strand, within AO356_21725at 4863.481 kb on - strand, within AO356_21725at 4863.639 kb on + strandat 4863.640 kb on - strandat 4863.974 kb on - strandat 4863.974 kb on - strandat 4863.974 kb on - strandat 4864.269 kb on + strand, within AO356_21730at 4864.269 kb on + strand, within AO356_21730at 4864.270 kb on - strand, within AO356_21730at 4864.371 kb on + strand, within AO356_21730at 4864.371 kb on + strand, within AO356_21730at 4864.372 kb on - strand, within AO356_21730at 4864.528 kb on - strand, within AO356_21730at 4864.617 kb on + strand, within AO356_21730at 4864.618 kb on - strand, within AO356_21730at 4864.623 kb on + strand, within AO356_21730at 4864.624 kb on - strand, within AO356_21730at 4864.624 kb on - strand, within AO356_21730at 4864.698 kb on + strand, within AO356_21730at 4864.699 kb on - strand, within AO356_21730at 4864.699 kb on - strand, within AO356_21730at 4864.699 kb on - strand, within AO356_21730at 4865.050 kb on - strand, within AO356_21730at 4865.289 kb on + strand, within AO356_21730at 4865.289 kb on + strand, within AO356_21730at 4865.290 kb on - strand, within AO356_21730at 4865.290 kb on - strand, within AO356_21730at 4865.313 kb on + strand, within AO356_21730at 4865.314 kb on - strand, within AO356_21730at 4865.314 kb on - strand, within AO356_21730at 4865.314 kb on - strand, within AO356_21730at 4865.314 kb on - strand, within AO356_21730at 4865.314 kb on - strand, within AO356_21730at 4865.314 kb on - strand, within AO356_21730at 4865.314 kb on - strand, within AO356_21730at 4865.448 kb on + strandat 4865.448 kb on + strandat 4865.476 kb on - strandat 4865.476 kb on - strandat 4865.580 kb on + strandat 4865.580 kb on + strandat 4865.581 kb on - strandat 4865.586 kb on + strandat 4865.586 kb on + strandat 4865.587 kb on - strandat 4865.644 kb on + strandat 4865.645 kb on - strandat 4865.764 kb on - strandat 4865.847 kb on - strand, within AO356_21735at 4865.904 kb on + strand, within AO356_21735at 4866.232 kb on - strand, within AO356_21735at 4866.246 kb on + strand, within AO356_21735at 4866.246 kb on + strand, within AO356_21735at 4866.309 kb on + strand, within AO356_21735at 4866.309 kb on + strand, within AO356_21735at 4866.310 kb on - strand, within AO356_21735at 4866.454 kb on - strand, within AO356_21735at 4866.454 kb on - strand, within AO356_21735at 4866.454 kb on - strand, within AO356_21735at 4866.454 kb on - strand, within AO356_21735at 4866.454 kb on - strand, within AO356_21735at 4866.454 kb on - strand, within AO356_21735at 4866.454 kb on - strand, within AO356_21735at 4866.516 kb on + strand, within AO356_21735at 4866.517 kb on - strand, within AO356_21735at 4866.554 kb on - strandat 4866.576 kb on + strandat 4866.576 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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4,863,318 + AO356_21725 0.73 -0.0
4,863,318 + AO356_21725 0.73 -0.4
4,863,318 + AO356_21725 0.73 -0.7
4,863,318 + AO356_21725 0.73 -0.1
4,863,318 + AO356_21725 0.73 +0.3
4,863,319 - AO356_21725 0.73 -0.4
4,863,319 - AO356_21725 0.73 +1.2
4,863,319 - AO356_21725 0.73 +0.3
4,863,319 - AO356_21725 0.73 -0.9
4,863,319 - AO356_21725 0.73 -0.2
4,863,319 - AO356_21725 0.73 +0.7
4,863,374 + AO356_21725 0.76 +0.3
4,863,375 - AO356_21725 0.76 -1.2
4,863,414 + AO356_21725 0.79 -0.4
4,863,414 + AO356_21725 0.79 -0.5
4,863,414 + AO356_21725 0.79 -0.5
4,863,414 + AO356_21725 0.79 +0.7
4,863,415 - AO356_21725 0.79 +0.1
4,863,480 + AO356_21725 0.83 -0.7
4,863,480 + AO356_21725 0.83 +0.9
4,863,480 + AO356_21725 0.83 +1.1
4,863,481 - AO356_21725 0.83 -0.9
4,863,481 - AO356_21725 0.83 -0.1
4,863,481 - AO356_21725 0.83 +0.0
4,863,481 - AO356_21725 0.83 +0.8
4,863,639 + -0.2
4,863,640 - +0.6
4,863,974 - -1.3
4,863,974 - -0.8
4,863,974 - -2.0
4,864,269 + AO356_21730 0.18 -0.3
4,864,269 + AO356_21730 0.18 +0.1
4,864,270 - AO356_21730 0.19 -1.0
4,864,371 + AO356_21730 0.25 -1.5
4,864,371 + AO356_21730 0.25 -0.4
4,864,372 - AO356_21730 0.25 -1.0
4,864,528 - AO356_21730 0.34 +0.2
4,864,617 + AO356_21730 0.40 +2.3
4,864,618 - AO356_21730 0.40 +0.1
4,864,623 + AO356_21730 0.40 -0.8
4,864,624 - AO356_21730 0.40 -0.5
4,864,624 - AO356_21730 0.40 +0.0
4,864,698 + AO356_21730 0.45 -0.0
4,864,699 - AO356_21730 0.45 -0.9
4,864,699 - AO356_21730 0.45 +0.8
4,864,699 - AO356_21730 0.45 +0.1
4,865,050 - AO356_21730 0.66 +0.5
4,865,289 + AO356_21730 0.81 +1.5
4,865,289 + AO356_21730 0.81 -1.4
4,865,290 - AO356_21730 0.81 -0.2
4,865,290 - AO356_21730 0.81 +0.1
4,865,313 + AO356_21730 0.82 -0.9
4,865,314 - AO356_21730 0.82 +1.1
4,865,314 - AO356_21730 0.82 -0.6
4,865,314 - AO356_21730 0.82 -0.2
4,865,314 - AO356_21730 0.82 -0.1
4,865,314 - AO356_21730 0.82 -0.8
4,865,314 - AO356_21730 0.82 +0.4
4,865,314 - AO356_21730 0.82 +0.2
4,865,448 + -0.3
4,865,448 + +0.1
4,865,476 - -1.4
4,865,476 - +0.5
4,865,580 + -0.3
4,865,580 + +0.4
4,865,581 - +1.2
4,865,586 + -0.6
4,865,586 + +0.6
4,865,587 - +0.1
4,865,644 + +0.1
4,865,645 - -0.6
4,865,764 - -1.4
4,865,847 - AO356_21735 0.12 -0.9
4,865,904 + AO356_21735 0.19 -0.3
4,866,232 - AO356_21735 0.56 +0.8
4,866,246 + AO356_21735 0.57 +0.1
4,866,246 + AO356_21735 0.57 +0.3
4,866,309 + AO356_21735 0.64 -0.3
4,866,309 + AO356_21735 0.64 -0.6
4,866,310 - AO356_21735 0.65 -0.4
4,866,454 - AO356_21735 0.81 -0.1
4,866,454 - AO356_21735 0.81 -1.9
4,866,454 - AO356_21735 0.81 +0.7
4,866,454 - AO356_21735 0.81 -0.2
4,866,454 - AO356_21735 0.81 -1.8
4,866,454 - AO356_21735 0.81 -1.4
4,866,454 - AO356_21735 0.81 -1.2
4,866,516 + AO356_21735 0.88 -0.9
4,866,517 - AO356_21735 0.88 +0.6
4,866,554 - +0.7
4,866,576 + +0.6
4,866,576 + -0.5

Or see this region's nucleotide sequence