Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20895

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20885 and AO356_20890 are separated by 0 nucleotidesAO356_20890 and AO356_20895 overlap by 1 nucleotidesAO356_20895 and AO356_20900 overlap by 4 nucleotidesAO356_20900 and AO356_20905 are separated by 35 nucleotides AO356_20885: AO356_20885 - metal ABC transporter substrate-binding protein, at 4,654,514 to 4,655,407 _20885 AO356_20890: AO356_20890 - zinc ABC transporter permease, at 4,655,408 to 4,656,307 _20890 AO356_20895: AO356_20895 - manganese ABC transporter ATP-binding protein, at 4,656,307 to 4,657,059 _20895 AO356_20900: AO356_20900 - ABC transporter substrate-binding protein, at 4,657,056 to 4,657,985 _20900 AO356_20905: AO356_20905 - hypothetical protein, at 4,658,021 to 4,658,596 _20905 Position (kb) 4656 4657 4658Strain fitness (log2 ratio) -2 -1 0 1 2at 4655.410 kb on - strandat 4655.715 kb on + strand, within AO356_20890at 4655.715 kb on + strand, within AO356_20890at 4655.716 kb on - strand, within AO356_20890at 4655.790 kb on + strand, within AO356_20890at 4655.790 kb on + strand, within AO356_20890at 4655.790 kb on + strand, within AO356_20890at 4655.790 kb on + strand, within AO356_20890at 4655.791 kb on - strand, within AO356_20890at 4655.882 kb on + strand, within AO356_20890at 4655.882 kb on + strand, within AO356_20890at 4655.882 kb on + strand, within AO356_20890at 4655.883 kb on - strand, within AO356_20890at 4656.072 kb on + strand, within AO356_20890at 4656.072 kb on + strand, within AO356_20890at 4656.073 kb on - strand, within AO356_20890at 4656.300 kb on + strandat 4656.300 kb on + strandat 4656.300 kb on + strandat 4656.300 kb on + strandat 4656.300 kb on + strandat 4656.301 kb on - strandat 4656.301 kb on - strandat 4656.301 kb on - strandat 4656.301 kb on - strandat 4656.301 kb on - strandat 4656.301 kb on - strandat 4656.701 kb on + strand, within AO356_20895at 4656.701 kb on + strand, within AO356_20895at 4656.701 kb on + strand, within AO356_20895at 4656.702 kb on - strand, within AO356_20895at 4656.702 kb on - strand, within AO356_20895at 4656.809 kb on + strand, within AO356_20895at 4657.121 kb on - strandat 4657.121 kb on - strandat 4657.135 kb on + strandat 4657.196 kb on + strand, within AO356_20900at 4657.197 kb on - strand, within AO356_20900at 4657.204 kb on + strand, within AO356_20900at 4657.204 kb on + strand, within AO356_20900at 4657.205 kb on - strand, within AO356_20900at 4657.205 kb on - strand, within AO356_20900at 4657.205 kb on - strand, within AO356_20900at 4657.357 kb on + strand, within AO356_20900at 4657.357 kb on + strand, within AO356_20900at 4657.357 kb on + strand, within AO356_20900at 4657.357 kb on + strand, within AO356_20900at 4657.357 kb on + strand, within AO356_20900at 4657.358 kb on - strand, within AO356_20900at 4657.358 kb on - strand, within AO356_20900at 4657.364 kb on - strand, within AO356_20900at 4657.478 kb on + strand, within AO356_20900at 4657.480 kb on + strand, within AO356_20900at 4657.481 kb on - strand, within AO356_20900at 4657.481 kb on - strand, within AO356_20900at 4657.481 kb on - strand, within AO356_20900at 4657.481 kb on - strand, within AO356_20900at 4657.775 kb on - strand, within AO356_20900at 4657.847 kb on - strand, within AO356_20900at 4657.847 kb on - strand, within AO356_20900at 4657.847 kb on - strand, within AO356_20900at 4657.852 kb on + strand, within AO356_20900at 4657.852 kb on + strand, within AO356_20900at 4657.852 kb on + strand, within AO356_20900at 4657.853 kb on - strand, within AO356_20900at 4657.853 kb on - strand, within AO356_20900at 4657.853 kb on - strand, within AO356_20900at 4657.853 kb on - strand, within AO356_20900at 4657.853 kb on - strand, within AO356_20900at 4657.856 kb on - strand, within AO356_20900at 4657.980 kb on - strandat 4657.980 kb on - strandat 4657.980 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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4,655,410 - -0.1
4,655,715 + AO356_20890 0.34 +0.3
4,655,715 + AO356_20890 0.34 +0.3
4,655,716 - AO356_20890 0.34 -0.7
4,655,790 + AO356_20890 0.42 -0.1
4,655,790 + AO356_20890 0.42 -0.6
4,655,790 + AO356_20890 0.42 +0.4
4,655,790 + AO356_20890 0.42 -0.6
4,655,791 - AO356_20890 0.43 -1.4
4,655,882 + AO356_20890 0.53 -1.3
4,655,882 + AO356_20890 0.53 -0.6
4,655,882 + AO356_20890 0.53 +0.1
4,655,883 - AO356_20890 0.53 +0.5
4,656,072 + AO356_20890 0.74 +0.5
4,656,072 + AO356_20890 0.74 -2.7
4,656,073 - AO356_20890 0.74 +0.6
4,656,300 + -1.3
4,656,300 + -0.7
4,656,300 + +0.4
4,656,300 + +0.9
4,656,300 + -0.8
4,656,301 - -1.6
4,656,301 - -1.0
4,656,301 - +0.3
4,656,301 - -2.4
4,656,301 - -0.7
4,656,301 - -0.7
4,656,701 + AO356_20895 0.52 -0.1
4,656,701 + AO356_20895 0.52 -0.1
4,656,701 + AO356_20895 0.52 -0.1
4,656,702 - AO356_20895 0.52 -0.4
4,656,702 - AO356_20895 0.52 -1.3
4,656,809 + AO356_20895 0.67 -0.2
4,657,121 - +0.5
4,657,121 - +0.1
4,657,135 + +1.9
4,657,196 + AO356_20900 0.15 +0.8
4,657,197 - AO356_20900 0.15 +0.2
4,657,204 + AO356_20900 0.16 -0.6
4,657,204 + AO356_20900 0.16 -1.0
4,657,205 - AO356_20900 0.16 -0.8
4,657,205 - AO356_20900 0.16 -1.7
4,657,205 - AO356_20900 0.16 +1.6
4,657,357 + AO356_20900 0.32 +1.1
4,657,357 + AO356_20900 0.32 -0.7
4,657,357 + AO356_20900 0.32 +1.0
4,657,357 + AO356_20900 0.32 -0.4
4,657,357 + AO356_20900 0.32 +0.2
4,657,358 - AO356_20900 0.32 -0.1
4,657,358 - AO356_20900 0.32 +0.5
4,657,364 - AO356_20900 0.33 -0.4
4,657,478 + AO356_20900 0.45 +0.6
4,657,480 + AO356_20900 0.46 -0.1
4,657,481 - AO356_20900 0.46 -1.2
4,657,481 - AO356_20900 0.46 +1.4
4,657,481 - AO356_20900 0.46 +0.2
4,657,481 - AO356_20900 0.46 +0.3
4,657,775 - AO356_20900 0.77 -0.0
4,657,847 - AO356_20900 0.85 +0.5
4,657,847 - AO356_20900 0.85 +0.4
4,657,847 - AO356_20900 0.85 +1.1
4,657,852 + AO356_20900 0.86 +0.3
4,657,852 + AO356_20900 0.86 +0.8
4,657,852 + AO356_20900 0.86 -0.7
4,657,853 - AO356_20900 0.86 +0.7
4,657,853 - AO356_20900 0.86 +0.2
4,657,853 - AO356_20900 0.86 -0.3
4,657,853 - AO356_20900 0.86 +0.2
4,657,853 - AO356_20900 0.86 +0.3
4,657,856 - AO356_20900 0.86 -0.5
4,657,980 - -0.4
4,657,980 - +0.5
4,657,980 - -0.6

Or see this region's nucleotide sequence