Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20885 and AO356_20890 are separated by 0 nucleotides AO356_20890 and AO356_20895 overlap by 1 nucleotides AO356_20895 and AO356_20900 overlap by 4 nucleotides AO356_20900 and AO356_20905 are separated by 35 nucleotides
AO356_20885: AO356_20885 - metal ABC transporter substrate-binding protein, at 4,654,514 to 4,655,407
_20885
AO356_20890: AO356_20890 - zinc ABC transporter permease, at 4,655,408 to 4,656,307
_20890
AO356_20895: AO356_20895 - manganese ABC transporter ATP-binding protein, at 4,656,307 to 4,657,059
_20895
AO356_20900: AO356_20900 - ABC transporter substrate-binding protein, at 4,657,056 to 4,657,985
_20900
AO356_20905: AO356_20905 - hypothetical protein, at 4,658,021 to 4,658,596
_20905
Position (kb)
4656
4657
4658 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4655.410 kb on - strand at 4655.715 kb on + strand, within AO356_20890 at 4655.715 kb on + strand, within AO356_20890 at 4655.716 kb on - strand, within AO356_20890 at 4655.790 kb on + strand, within AO356_20890 at 4655.790 kb on + strand, within AO356_20890 at 4655.790 kb on + strand, within AO356_20890 at 4655.790 kb on + strand, within AO356_20890 at 4655.791 kb on - strand, within AO356_20890 at 4655.882 kb on + strand, within AO356_20890 at 4655.882 kb on + strand, within AO356_20890 at 4655.882 kb on + strand, within AO356_20890 at 4655.883 kb on - strand, within AO356_20890 at 4656.072 kb on + strand, within AO356_20890 at 4656.072 kb on + strand, within AO356_20890 at 4656.073 kb on - strand, within AO356_20890 at 4656.300 kb on + strand at 4656.300 kb on + strand at 4656.300 kb on + strand at 4656.300 kb on + strand at 4656.300 kb on + strand at 4656.301 kb on - strand at 4656.301 kb on - strand at 4656.301 kb on - strand at 4656.301 kb on - strand at 4656.301 kb on - strand at 4656.301 kb on - strand at 4656.701 kb on + strand, within AO356_20895 at 4656.701 kb on + strand, within AO356_20895 at 4656.701 kb on + strand, within AO356_20895 at 4656.702 kb on - strand, within AO356_20895 at 4656.702 kb on - strand, within AO356_20895 at 4656.809 kb on + strand, within AO356_20895 at 4657.121 kb on - strand at 4657.121 kb on - strand at 4657.135 kb on + strand at 4657.196 kb on + strand, within AO356_20900 at 4657.197 kb on - strand, within AO356_20900 at 4657.204 kb on + strand, within AO356_20900 at 4657.204 kb on + strand, within AO356_20900 at 4657.205 kb on - strand, within AO356_20900 at 4657.205 kb on - strand, within AO356_20900 at 4657.205 kb on - strand, within AO356_20900 at 4657.357 kb on + strand, within AO356_20900 at 4657.357 kb on + strand, within AO356_20900 at 4657.357 kb on + strand, within AO356_20900 at 4657.357 kb on + strand, within AO356_20900 at 4657.357 kb on + strand, within AO356_20900 at 4657.358 kb on - strand, within AO356_20900 at 4657.358 kb on - strand, within AO356_20900 at 4657.364 kb on - strand, within AO356_20900 at 4657.478 kb on + strand, within AO356_20900 at 4657.480 kb on + strand, within AO356_20900 at 4657.481 kb on - strand, within AO356_20900 at 4657.481 kb on - strand, within AO356_20900 at 4657.481 kb on - strand, within AO356_20900 at 4657.481 kb on - strand, within AO356_20900 at 4657.775 kb on - strand, within AO356_20900 at 4657.847 kb on - strand, within AO356_20900 at 4657.847 kb on - strand, within AO356_20900 at 4657.847 kb on - strand, within AO356_20900 at 4657.852 kb on + strand, within AO356_20900 at 4657.852 kb on + strand, within AO356_20900 at 4657.852 kb on + strand, within AO356_20900 at 4657.853 kb on - strand, within AO356_20900 at 4657.853 kb on - strand, within AO356_20900 at 4657.853 kb on - strand, within AO356_20900 at 4657.853 kb on - strand, within AO356_20900 at 4657.853 kb on - strand, within AO356_20900 at 4657.856 kb on - strand, within AO356_20900 at 4657.980 kb on - strand at 4657.980 kb on - strand at 4657.980 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 4,655,410 - -0.1 4,655,715 + AO356_20890 0.34 +0.3 4,655,715 + AO356_20890 0.34 +0.3 4,655,716 - AO356_20890 0.34 -0.7 4,655,790 + AO356_20890 0.42 -0.1 4,655,790 + AO356_20890 0.42 -0.6 4,655,790 + AO356_20890 0.42 +0.4 4,655,790 + AO356_20890 0.42 -0.6 4,655,791 - AO356_20890 0.43 -1.4 4,655,882 + AO356_20890 0.53 -1.3 4,655,882 + AO356_20890 0.53 -0.6 4,655,882 + AO356_20890 0.53 +0.1 4,655,883 - AO356_20890 0.53 +0.5 4,656,072 + AO356_20890 0.74 +0.5 4,656,072 + AO356_20890 0.74 -2.7 4,656,073 - AO356_20890 0.74 +0.6 4,656,300 + -1.3 4,656,300 + -0.7 4,656,300 + +0.4 4,656,300 + +0.9 4,656,300 + -0.8 4,656,301 - -1.6 4,656,301 - -1.0 4,656,301 - +0.3 4,656,301 - -2.4 4,656,301 - -0.7 4,656,301 - -0.7 4,656,701 + AO356_20895 0.52 -0.1 4,656,701 + AO356_20895 0.52 -0.1 4,656,701 + AO356_20895 0.52 -0.1 4,656,702 - AO356_20895 0.52 -0.4 4,656,702 - AO356_20895 0.52 -1.3 4,656,809 + AO356_20895 0.67 -0.2 4,657,121 - +0.5 4,657,121 - +0.1 4,657,135 + +1.9 4,657,196 + AO356_20900 0.15 +0.8 4,657,197 - AO356_20900 0.15 +0.2 4,657,204 + AO356_20900 0.16 -0.6 4,657,204 + AO356_20900 0.16 -1.0 4,657,205 - AO356_20900 0.16 -0.8 4,657,205 - AO356_20900 0.16 -1.7 4,657,205 - AO356_20900 0.16 +1.6 4,657,357 + AO356_20900 0.32 +1.1 4,657,357 + AO356_20900 0.32 -0.7 4,657,357 + AO356_20900 0.32 +1.0 4,657,357 + AO356_20900 0.32 -0.4 4,657,357 + AO356_20900 0.32 +0.2 4,657,358 - AO356_20900 0.32 -0.1 4,657,358 - AO356_20900 0.32 +0.5 4,657,364 - AO356_20900 0.33 -0.4 4,657,478 + AO356_20900 0.45 +0.6 4,657,480 + AO356_20900 0.46 -0.1 4,657,481 - AO356_20900 0.46 -1.2 4,657,481 - AO356_20900 0.46 +1.4 4,657,481 - AO356_20900 0.46 +0.2 4,657,481 - AO356_20900 0.46 +0.3 4,657,775 - AO356_20900 0.77 -0.0 4,657,847 - AO356_20900 0.85 +0.5 4,657,847 - AO356_20900 0.85 +0.4 4,657,847 - AO356_20900 0.85 +1.1 4,657,852 + AO356_20900 0.86 +0.3 4,657,852 + AO356_20900 0.86 +0.8 4,657,852 + AO356_20900 0.86 -0.7 4,657,853 - AO356_20900 0.86 +0.7 4,657,853 - AO356_20900 0.86 +0.2 4,657,853 - AO356_20900 0.86 -0.3 4,657,853 - AO356_20900 0.86 +0.2 4,657,853 - AO356_20900 0.86 +0.3 4,657,856 - AO356_20900 0.86 -0.5 4,657,980 - -0.4 4,657,980 - +0.5 4,657,980 - -0.6
Or see this region's nucleotide sequence