Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3102 and Ga0059261_3103 overlap by 4 nucleotides Ga0059261_3103 and Ga0059261_3104 are separated by 3 nucleotides
Ga0059261_3102: Ga0059261_3102 - UDP-N-Acetylglucosamine 2-epimerase (EC 5.1.3.14), at 3,239,377 to 3,240,531
_3102
Ga0059261_3103: Ga0059261_3103 - Glycosyltransferase, at 3,240,528 to 3,241,754
_3103
Ga0059261_3104: Ga0059261_3104 - Uncharacterized protein conserved in bacteria, at 3,241,758 to 3,243,398
_3104
Position (kb)
3240
3241
3242 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3239.681 kb on + strand at 3239.773 kb on + strand, within Ga0059261_3102 at 3239.941 kb on - strand, within Ga0059261_3102 at 3240.189 kb on - strand, within Ga0059261_3102 at 3240.455 kb on + strand at 3240.455 kb on + strand at 3240.455 kb on + strand at 3240.455 kb on + strand at 3240.456 kb on - strand at 3240.583 kb on + strand at 3240.584 kb on - strand at 3240.825 kb on + strand, within Ga0059261_3103 at 3240.825 kb on + strand, within Ga0059261_3103 at 3240.981 kb on - strand, within Ga0059261_3103 at 3241.252 kb on + strand, within Ga0059261_3103 at 3241.253 kb on - strand, within Ga0059261_3103 at 3241.492 kb on + strand, within Ga0059261_3103 at 3241.493 kb on - strand, within Ga0059261_3103 at 3241.493 kb on - strand at 3241.493 kb on - strand, within Ga0059261_3103 at 3241.493 kb on - strand at 3241.493 kb on - strand, within Ga0059261_3103 at 3241.534 kb on + strand, within Ga0059261_3103 at 3241.534 kb on + strand, within Ga0059261_3103 at 3241.534 kb on + strand, within Ga0059261_3103 at 3241.534 kb on + strand at 3241.535 kb on - strand, within Ga0059261_3103 at 3241.535 kb on - strand, within Ga0059261_3103 at 3241.535 kb on - strand, within Ga0059261_3103 at 3242.359 kb on + strand, within Ga0059261_3104 at 3242.707 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,239,681 + -0.9 3,239,773 + Ga0059261_3102 0.34 -0.5 3,239,941 - Ga0059261_3102 0.49 +0.5 3,240,189 - Ga0059261_3102 0.70 +0.1 3,240,455 + +0.4 3,240,455 + -0.9 3,240,455 + -0.5 3,240,455 + +0.7 3,240,456 - -0.5 3,240,583 + -0.5 3,240,584 - -0.5 3,240,825 + Ga0059261_3103 0.24 -1.2 3,240,825 + Ga0059261_3103 0.24 -2.2 3,240,981 - Ga0059261_3103 0.37 -2.4 3,241,252 + Ga0059261_3103 0.59 -0.1 3,241,253 - Ga0059261_3103 0.59 -0.1 3,241,492 + Ga0059261_3103 0.79 -1.9 3,241,493 - Ga0059261_3103 0.79 -0.5 3,241,493 - +2.7 3,241,493 - Ga0059261_3103 0.79 -1.1 3,241,493 - -1.5 3,241,493 - Ga0059261_3103 0.79 -0.2 3,241,534 + Ga0059261_3103 0.82 -1.0 3,241,534 + Ga0059261_3103 0.82 -1.9 3,241,534 + Ga0059261_3103 0.82 -0.1 3,241,534 + -0.5 3,241,535 - Ga0059261_3103 0.82 +1.1 3,241,535 - Ga0059261_3103 0.82 -0.3 3,241,535 - Ga0059261_3103 0.82 -2.5 3,242,359 + Ga0059261_3104 0.37 -0.9 3,242,707 + +0.1
Or see this region's nucleotide sequence