Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2732 and Ga0059261_2733 are separated by 199 nucleotides Ga0059261_2733 and Ga0059261_2734 are separated by 18 nucleotides Ga0059261_2734 and Ga0059261_2735 overlap by 4 nucleotides Ga0059261_2735 and Ga0059261_2736 are separated by 157 nucleotides Ga0059261_2736 and Ga0059261_2737 are separated by 67 nucleotides
Ga0059261_2732: Ga0059261_2732 - hypothetical protein, at 2,843,984 to 2,845,129
_2732
Ga0059261_2733: Ga0059261_2733 - translation initiation factor IF-3, at 2,845,329 to 2,845,862
_2733
Ga0059261_2734: Ga0059261_2734 - hypothetical protein, at 2,845,881 to 2,846,057
_2734
Ga0059261_2735: Ga0059261_2735 - Glyoxalase-like domain, at 2,846,054 to 2,846,437
_2735
Ga0059261_2736: Ga0059261_2736 - hypothetical protein, at 2,846,595 to 2,846,966
_2736
Ga0059261_2737: Ga0059261_2737 - UTP--GlnB (protein PII) uridylyltransferase, GlnD, at 2,847,034 to 2,849,775
_2737
Position (kb)
2846
2847 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2845.128 kb on - strand at 2845.195 kb on + strand at 2845.195 kb on + strand at 2845.196 kb on - strand at 2845.196 kb on - strand at 2845.203 kb on + strand at 2845.203 kb on + strand at 2845.867 kb on - strand at 2845.883 kb on - strand at 2845.883 kb on - strand at 2846.134 kb on + strand, within Ga0059261_2735 at 2846.247 kb on + strand, within Ga0059261_2735 at 2846.353 kb on + strand, within Ga0059261_2735 at 2846.354 kb on - strand, within Ga0059261_2735 at 2846.370 kb on + strand, within Ga0059261_2735 at 2846.429 kb on + strand at 2846.429 kb on + strand at 2846.430 kb on - strand at 2846.430 kb on - strand at 2846.430 kb on - strand at 2846.430 kb on - strand at 2846.468 kb on + strand at 2846.468 kb on + strand at 2846.468 kb on + strand at 2846.468 kb on + strand at 2846.468 kb on + strand at 2846.469 kb on - strand at 2846.582 kb on + strand at 2846.582 kb on + strand at 2846.582 kb on + strand at 2846.582 kb on + strand at 2846.583 kb on - strand at 2846.583 kb on - strand at 2846.583 kb on - strand at 2846.583 kb on - strand at 2846.583 kb on - strand at 2846.728 kb on + strand, within Ga0059261_2736 at 2846.728 kb on + strand, within Ga0059261_2736 at 2846.728 kb on + strand, within Ga0059261_2736 at 2846.729 kb on - strand, within Ga0059261_2736 at 2846.729 kb on - strand, within Ga0059261_2736 at 2846.729 kb on - strand, within Ga0059261_2736 at 2846.760 kb on + strand, within Ga0059261_2736 at 2846.760 kb on + strand, within Ga0059261_2736 at 2846.761 kb on - strand, within Ga0059261_2736 at 2846.761 kb on - strand, within Ga0059261_2736 at 2846.945 kb on + strand at 2846.945 kb on + strand at 2846.946 kb on - strand at 2846.984 kb on + strand at 2846.985 kb on - strand at 2847.146 kb on + strand at 2847.173 kb on + strand at 2847.174 kb on - strand at 2847.225 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 2,845,128 - -0.3 2,845,195 + +0.3 2,845,195 + +0.5 2,845,196 - -1.0 2,845,196 - -0.0 2,845,203 + -0.6 2,845,203 + -0.2 2,845,867 - -0.6 2,845,883 - -2.2 2,845,883 - -0.2 2,846,134 + Ga0059261_2735 0.21 -0.4 2,846,247 + Ga0059261_2735 0.50 -2.4 2,846,353 + Ga0059261_2735 0.78 -0.2 2,846,354 - Ga0059261_2735 0.78 -1.4 2,846,370 + Ga0059261_2735 0.82 -1.2 2,846,429 + +0.8 2,846,429 + +0.1 2,846,430 - +0.6 2,846,430 - +0.3 2,846,430 - +0.0 2,846,430 - +0.1 2,846,468 + +0.2 2,846,468 + -0.2 2,846,468 + -1.2 2,846,468 + +0.3 2,846,468 + +0.3 2,846,469 - -2.7 2,846,582 + -1.1 2,846,582 + +0.2 2,846,582 + -0.1 2,846,582 + -0.5 2,846,583 - +0.1 2,846,583 - +0.5 2,846,583 - +2.2 2,846,583 - +1.1 2,846,583 - +0.4 2,846,728 + Ga0059261_2736 0.36 -0.6 2,846,728 + Ga0059261_2736 0.36 +0.0 2,846,728 + Ga0059261_2736 0.36 +1.3 2,846,729 - Ga0059261_2736 0.36 +0.0 2,846,729 - Ga0059261_2736 0.36 -0.4 2,846,729 - Ga0059261_2736 0.36 +0.3 2,846,760 + Ga0059261_2736 0.44 +0.1 2,846,760 + Ga0059261_2736 0.44 -0.5 2,846,761 - Ga0059261_2736 0.45 +0.3 2,846,761 - Ga0059261_2736 0.45 +0.2 2,846,945 + +0.3 2,846,945 + -0.2 2,846,946 - -1.2 2,846,984 + +0.1 2,846,985 - -1.4 2,847,146 + +3.1 2,847,173 + -2.5 2,847,174 - +1.7 2,847,225 - +1.1
Or see this region's nucleotide sequence