Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1933 and Ga0059261_1934 overlap by 8 nucleotides Ga0059261_1934 and Ga0059261_1935 are separated by 103 nucleotides Ga0059261_1935 and Ga0059261_1936 are separated by 270 nucleotides
Ga0059261_1933: Ga0059261_1933 - Helicase conserved C-terminal domain, at 2,042,392 to 2,044,878
_1933
Ga0059261_1934: Ga0059261_1934 - Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog), at 2,044,871 to 2,045,170
_1934
Ga0059261_1935: Ga0059261_1935 - Ferredoxin, at 2,045,274 to 2,045,615
_1935
Ga0059261_1936: Ga0059261_1936 - transcriptional regulator, CarD family, at 2,045,886 to 2,046,419
_1936
Position (kb)
2044
2045
2046 Strain fitness (log2 ratio)
-1
0
1 at 2045.059 kb on - strand, within Ga0059261_1934 at 2045.117 kb on + strand, within Ga0059261_1934 at 2045.117 kb on + strand, within Ga0059261_1934 at 2045.117 kb on + strand, within Ga0059261_1934 at 2045.118 kb on - strand, within Ga0059261_1934 at 2045.118 kb on - strand, within Ga0059261_1934 at 2045.118 kb on - strand, within Ga0059261_1934 at 2045.176 kb on + strand at 2045.176 kb on + strand at 2045.719 kb on + strand at 2045.739 kb on + strand at 2045.868 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 2,045,059 - Ga0059261_1934 0.63 +0.3 2,045,117 + Ga0059261_1934 0.82 -0.5 2,045,117 + Ga0059261_1934 0.82 -0.6 2,045,117 + Ga0059261_1934 0.82 -0.8 2,045,118 - Ga0059261_1934 0.82 -0.2 2,045,118 - Ga0059261_1934 0.82 +0.4 2,045,118 - Ga0059261_1934 0.82 -1.4 2,045,176 + +0.4 2,045,176 + +0.1 2,045,719 + +0.4 2,045,739 + -1.2 2,045,868 + -0.8
Or see this region's nucleotide sequence