Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1934

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1933 and Ga0059261_1934 overlap by 8 nucleotidesGa0059261_1934 and Ga0059261_1935 are separated by 103 nucleotidesGa0059261_1935 and Ga0059261_1936 are separated by 270 nucleotides Ga0059261_1933: Ga0059261_1933 - Helicase conserved C-terminal domain, at 2,042,392 to 2,044,878 _1933 Ga0059261_1934: Ga0059261_1934 - Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog), at 2,044,871 to 2,045,170 _1934 Ga0059261_1935: Ga0059261_1935 - Ferredoxin, at 2,045,274 to 2,045,615 _1935 Ga0059261_1936: Ga0059261_1936 - transcriptional regulator, CarD family, at 2,045,886 to 2,046,419 _1936 Position (kb) 2044 2045 2046Strain fitness (log2 ratio) -1 0 1at 2045.059 kb on - strand, within Ga0059261_1934at 2045.117 kb on + strand, within Ga0059261_1934at 2045.117 kb on + strand, within Ga0059261_1934at 2045.117 kb on + strand, within Ga0059261_1934at 2045.118 kb on - strand, within Ga0059261_1934at 2045.118 kb on - strand, within Ga0059261_1934at 2045.118 kb on - strand, within Ga0059261_1934at 2045.176 kb on + strandat 2045.176 kb on + strandat 2045.719 kb on + strandat 2045.739 kb on + strandat 2045.868 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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2,045,059 - Ga0059261_1934 0.63 +0.3
2,045,117 + Ga0059261_1934 0.82 -0.5
2,045,117 + Ga0059261_1934 0.82 -0.6
2,045,117 + Ga0059261_1934 0.82 -0.8
2,045,118 - Ga0059261_1934 0.82 -0.2
2,045,118 - Ga0059261_1934 0.82 +0.4
2,045,118 - Ga0059261_1934 0.82 -1.4
2,045,176 + +0.4
2,045,176 + +0.1
2,045,719 + +0.4
2,045,739 + -1.2
2,045,868 + -0.8

Or see this region's nucleotide sequence